RNA id: TCONS_00042226


Basic Information

Item Value
RNA id TCONS_00042226
length 224
lncRNA type antisense_over
GC content 0.58
exon number 2
gene id XLOC_020646
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 101082 ~ 101447 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGCAGGTTGAAGGCCAGCAGCACGTTGATGAAGAGGTCCGGCAGCTGCTCAGTGCTGTCTGTGGGCAACCCGTCCTCAATCACATCCAGCAGGAACTGCAGGAAACCAGCGTTCAGCAGACAGAAAACCGGCAGACCGCTCGGGGCAGTGGCAGCTGTACGGgtcgggatcatccgcatgtctagcagacAAATATTACAGCACAATgtgcagcgatcgccg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041933 lncRNA downstream 64966 27146 ~ 36116 (-) True XLOC_020641
TCONS_00041934 lncRNA upstream 31325 132772 ~ 134339 (-) True XLOC_020647
TCONS_00040846 lncRNA upstream 59130 160577 ~ 161002 (-) True XLOC_020648
TCONS_00042227 lncRNA upstream 212263 313710 ~ 315374 (-) False XLOC_020657
TCONS_00042228 lncRNA upstream 212263 313710 ~ 315380 (-) True XLOC_020657
TCONS_00040856 lncRNA upstream 240892 342339 ~ 346253 (-) False XLOC_020658
TCONS_00040843 mRNA downstream 6563 89989 ~ 94519 (-) True XLOC_020645
TCONS_00040842 mRNA downstream 6730 85597 ~ 94352 (-) False XLOC_020645
TCONS_00040841 mRNA downstream 20549 76469 ~ 80533 (-) True XLOC_020644
TCONS_00040840 mRNA downstream 43905 56644 ~ 57177 (-) True XLOC_020643
TCONS_00040839 mRNA downstream 50204 44365 ~ 50878 (-) True XLOC_020642
TCONS_00040844 mRNA upstream 29520 130967 ~ 155627 (-) False XLOC_020647
TCONS_00040845 mRNA upstream 56665 158112 ~ 164944 (-) False XLOC_020648
TCONS_00040847 mRNA upstream 83223 184670 ~ 188112 (-) True XLOC_020649
TCONS_00040848 mRNA upstream 90484 191931 ~ 193234 (-) True XLOC_020650
TCONS_00040849 mRNA upstream 107197 208644 ~ 209741 (-) True XLOC_020651
TCONS_00040857 other upstream 243471 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040885 other upstream 711473 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040895 other upstream 1056622 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040899 other upstream 1128459 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 3493821 3595268 ~ 3680725 (-) True XLOC_020748