RNA id: TCONS_00041934


Basic Information

Item Value
RNA id TCONS_00041934
length 1256
lncRNA type sense_over
GC content 0.55
exon number 3
gene id XLOC_020647
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 130967 ~ 155627 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGTTACCATGCAACTCACGGAAGGCCAACGGCGGCTCACTTGAAACCAGAATCCATACCAGCAGAATATCGCGAAGCTCTCCACAGTAGTTTACAGCTCGACCGATTCAACATGTCACAGAGAGACATGAGAGTTCTTCTGCACCACCAGCAGACCGACCGCCCTGCGGCAGAACTACACCAGGGGCACCTGTCCGACACCCTGCCTGCCGCCTCCACACCAACCAGCATGGCGGCATCGCTCTCCCCTCGCCCACACCTGCTGGCGAAAGCCACATCTGAGAAGGAGCCCTTGAAGATCTCTGAGCTGAAGAGACCTCTGTCTCCTCCGGGGAAGGAGGGCATGCTGGCTATCCGTACTGCAATGCCACACATGGCCTCCCCTCAGAGAGTCCAGCTGCTGCCCGCAGGAGCAGGGCCGTCTTTCCCTGAATATCCAGCCCTGTACACAAACCTACGGCCTGCCCATGGTCAGTTTGCTGACAGTTCTCCAATGGGGATTAGCCAGCCTGCGCTCAGCATCACACCCACACAGGGTGTCCAGGAGCCAGAGTCCAGTCAGGCACAAGCTGAATCTAAAGTAGAGCTAGCTTCACATCAGCCAGTGAACATGGTGCAGCTTCTGACGGTAAGTCTTTAGACCAGGGTAAAcagacttggtcctggagggccgacgtcatgcagagtttagctccaaccctaatcaaacacgcctgaacaagctaatcaggctatacttgaaacttccagcCAGGTGTGCTGAGgtaagttagagctaaactctgccgGACAttagccctccaggactgagattggtgactgCATCTCTAGACCCAAGGCTGATGAGTTCAGCTTAACCCAGAGTATGAAATTGTTTTCTAACCTTGTTCTCGCTCCACAGAAATACCCTATTGTATGGCAAGGCCTGCTGGCGCTGAAGAACGATACGGCAGCAGTTCAACTGCACTTCTTGTGTGGAAATAAAGCTCTTGGTCTGCGTTCTCTGCCTCTGCCCGAGAGCGGAGGAATCCTGCGCATCGTCCAGAGAATGCGTCTGGAGGCGCAGCAACTGGAGGGAGTCGCTCGCAGGATGACGggtGAGAGTGATTTCTGTCTGCTGCTGGCGATGCCCTGTGGTCTGGACCAGGAGGATGTGCTGAACCAGACGCAGGCGCTCAAATCTGCCTTCATTAATTACCTGCAGGCCAAGCTGGCAGCGGGCATCATCAACGTGCCCAACCCCGGCTCTAATcag

Function

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042226 lncRNA downstream 31325 101082 ~ 101447 (-) True XLOC_020646
TCONS_00041933 lncRNA downstream 96656 27146 ~ 36116 (-) True XLOC_020641
TCONS_00040846 lncRNA upstream 26238 160577 ~ 161002 (-) True XLOC_020648
TCONS_00042227 lncRNA upstream 179371 313710 ~ 315374 (-) False XLOC_020657
TCONS_00042228 lncRNA upstream 179371 313710 ~ 315380 (-) True XLOC_020657
TCONS_00040856 lncRNA upstream 208000 342339 ~ 346253 (-) False XLOC_020658
TCONS_00040858 lncRNA upstream 211695 346034 ~ 346964 (-) True XLOC_020658
TCONS_00040843 mRNA downstream 38253 89989 ~ 94519 (-) True XLOC_020645
TCONS_00040842 mRNA downstream 38420 85597 ~ 94352 (-) False XLOC_020645
TCONS_00040841 mRNA downstream 52239 76469 ~ 80533 (-) True XLOC_020644
TCONS_00040840 mRNA downstream 75595 56644 ~ 57177 (-) True XLOC_020643
TCONS_00040839 mRNA downstream 81894 44365 ~ 50878 (-) True XLOC_020642
TCONS_00040845 mRNA upstream 23773 158112 ~ 164944 (-) False XLOC_020648
TCONS_00040847 mRNA upstream 50331 184670 ~ 188112 (-) True XLOC_020649
TCONS_00040848 mRNA upstream 57592 191931 ~ 193234 (-) True XLOC_020650
TCONS_00040849 mRNA upstream 74305 208644 ~ 209741 (-) True XLOC_020651
TCONS_00040850 mRNA upstream 91598 225937 ~ 237651 (-) True XLOC_020652
TCONS_00040857 other upstream 210579 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040885 other upstream 678581 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040895 other upstream 1023730 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040899 other upstream 1095567 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 3460929 3595268 ~ 3680725 (-) True XLOC_020748

Expression Profile

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