RNA id: TCONS_00040846


Basic Information

Item Value
RNA id TCONS_00040846
length 350
lncRNA type retained_intron
GC content 0.58
exon number 2
gene id XLOC_020648
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 158112 ~ 164944 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAGCTGGTCCGTTCCCGCCCCTCATGGCAGTTTTAGGTGTCCATTGGTCTAACTGTGTGTCCTGATCCTCTCTGATAGGCCAGTCTGGAGCCCTGCTGGGCCTGTGGTGATGTCATCAAAGATCATGTGATCCGAGCGCTGGAACGAGCCTATCACCCGCCCTGCTTCGTCTGCACCACCTGCCGACAACCAATCGGAGAGCAGCGATTCGCACAGGGGGAAGTGGGAGAGGTGTACTGCCTGCAGGACTactacagGAAGTACGCTCCTCAGTGCGGTGTGTGTGGGCTGATGATCATCCCGCGTGACGACGGAACTGACAGCTTCACCGTCGAGTGTTTGGGTCGC

Function

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0001725 stress fiber cellular_component
GO:0005925 focal adhesion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0031005 filamin binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-061013-662 Predicted to enable filamin binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be active in focal adhesion and stress fiber. Orthologous to human FBLIM1 (filamin binding LIM protein 1).

Ensembl:

ensembl_id ENSDART00000139720

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041934 lncRNA downstream 26238 132772 ~ 134339 (-) True XLOC_020647
TCONS_00042226 lncRNA downstream 59130 101082 ~ 101447 (-) True XLOC_020646
TCONS_00041933 lncRNA downstream 124461 27146 ~ 36116 (-) True XLOC_020641
TCONS_00042227 lncRNA upstream 152708 313710 ~ 315374 (-) False XLOC_020657
TCONS_00042228 lncRNA upstream 152708 313710 ~ 315380 (-) True XLOC_020657
TCONS_00040856 lncRNA upstream 181337 342339 ~ 346253 (-) False XLOC_020658
TCONS_00040858 lncRNA upstream 185032 346034 ~ 346964 (-) True XLOC_020658
TCONS_00042229 lncRNA upstream 210562 371564 ~ 372054 (-) True XLOC_020661
TCONS_00040844 mRNA downstream 4950 130967 ~ 155627 (-) False XLOC_020647
TCONS_00040843 mRNA downstream 66058 89989 ~ 94519 (-) True XLOC_020645
TCONS_00040842 mRNA downstream 66225 85597 ~ 94352 (-) False XLOC_020645
TCONS_00040841 mRNA downstream 80044 76469 ~ 80533 (-) True XLOC_020644
TCONS_00040840 mRNA downstream 103400 56644 ~ 57177 (-) True XLOC_020643
TCONS_00040847 mRNA upstream 23668 184670 ~ 188112 (-) True XLOC_020649
TCONS_00040848 mRNA upstream 30929 191931 ~ 193234 (-) True XLOC_020650
TCONS_00040849 mRNA upstream 47642 208644 ~ 209741 (-) True XLOC_020651
TCONS_00040850 mRNA upstream 64935 225937 ~ 237651 (-) True XLOC_020652
TCONS_00040851 mRNA upstream 93388 254390 ~ 263117 (-) True XLOC_020653
TCONS_00040857 other upstream 183916 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040885 other upstream 651918 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040895 other upstream 997067 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040899 other upstream 1068904 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 3434266 3595268 ~ 3680725 (-) True XLOC_020748

Expression Profile

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