RNA id: TCONS_00040850


Basic Information

Item Value
RNA id TCONS_00040850
length 1698
RNA type mRNA
GC content 0.48
exon number 15
gene id XLOC_020652
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 225937 ~ 237651 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTAAACCGCAACCATGGGGGATGGAGAAATGGAGTGTTTCGGCCCGGCAGCCATTTACCTCCGGAAGCCAGAAAGAGAGAGAATAGAGGCCCAGAACACTCCCTTTGATGCCAAAACAGCGTACTTTGTGGTGGATGCAGACGAGATGTACCTGAAGGGTACTCTTCAGAGTAAAGAGGGTGGCAAAGCTACTGTCAAAACTCACAGTGGGAAAACCGTCACGGTAAAAGAAGATGAAATCTTCCCCATGAATCCTCCCAAGTTTGACAAAATTGAGGACATGGCCATGATGACCCACCTCAATGAGCCTGCTGTGTTGTATAACCTCAAAGAGCGTTACGCAGCATGGATGATCTATACCTACTCTGGCTTGTTCTGCGTCACTGTCAATCCATACAAATGGCTCCCAGTGTACGACTCAGTCGTTGTGACTGGATACAGAGGCAAGAAGAGGATTGAAGCCCCACCTCACATCTTCTCCATCTCTGACAACGCCTACCAGTTCATGCTCACTGACAGGGAGAATCAGTCTATCCTGATTACTGGAGAATCTGGTGCAGGAAAGACTGTCAACACCAAACGTGTCATTCAGTACTTTGCAACAATTGCTGTGTCTGGAGGAGCAAAGAAGCAAGAACCTGTCCCAGGCAAAATGCAGGGGTCACTGGAGGATCAAATCATTGCTGCAAACCCTCTGCTGGAGGCTTATGGTAATGCCAAGACTGTGAGGAATGACAACTCCTCTCGTTTTGGTAAATTCATCAGGATTCACTTTGCAACAACTGGAAAGCTGGCTTCAGCTGATATTGAAACTTATTTGCTGGAAAAGTCAAGAGTAACATTCCAGCTGTCTGCTGAGAGGAGTTACCACATCTTCTACCAGCTCATGACTGGACACAAGCCAGAGCTGCTGGAGGCCCTGCTCATCACCACCAACCCTTTTGACTATCCAATGATCAGCCAGGGTGAAGTCACTGTCAAGAGCATCAATGATGTGGAGGAGTTCATTGCCACAGATACTGCCATTGACATTCTGGGCTTCACTGCTGAAGAGAAAATCGCCATCTACAAGCTGACCGGTGCTGTGATGCATCATGGGGGCATGAAGTTCAAACAGAAGCAGAGAGAGGAGCAGGCTGAACCTGATGGCACTGAGGTGGCTGATAAAATCGCCTACCTCATGGGCCTCAACTCTGCTGACATGCTGAAAGCTCTGTGTTACCCCAGAGTGAAGGTCGGAAACGAGATGGTGACCAAAGGCCAGACAGTCCCGCAGGTGAACAACGCAGTGTCAGCTCTCTGCAAGTCTGTCTATGAGAAAATGTTCTTGTGGATGGTTGTTCGTATCAATGAGATGTTGGACACAAAGCAGCCCAGACAGTTCTTCATTGGTGTGCTGGACATTGCTGGATTTGAGATCTTTGATTTCAACAGCTTGGAGCAGCTTTGCATCAACTTCACAAATGAGAAACTGCAACAGTTCTTCAACCACCACATGTTTGTTCTGGAGCAAGAGGAGTACAAGAAAGAAGGCATCGAATGGGAGTTCATTGACTTCGGTATGGACTTGGCTGCCTGCATTGAGCTCATTGAGAAGCCAATGGGCATCTTCTCCATCCTTGAAGAGGATGAAGAAGAACCTGGAGGTGACTGTCAAAGACCTGCAGCACCGTCTGGATGAGGCAGAGAATCTGGCC

Function

GO:

id name namespace
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1554 Predicted to enable ATP binding activity; actin filament binding activity; and cytoskeletal motor activity. Predicted to be part of myosin complex. Is expressed in cephalic musculature; myotome; pectoral fin musculature; and trunk musculature.

Ensembl:

ensembl_id ENSDART00000075210

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040846 lncRNA downstream 64935 160577 ~ 161002 (-) True XLOC_020648
TCONS_00041934 lncRNA downstream 91598 132772 ~ 134339 (-) True XLOC_020647
TCONS_00042226 lncRNA downstream 124490 101082 ~ 101447 (-) True XLOC_020646
TCONS_00041933 lncRNA downstream 189821 27146 ~ 36116 (-) True XLOC_020641
TCONS_00042227 lncRNA upstream 76059 313710 ~ 315374 (-) False XLOC_020657
TCONS_00042228 lncRNA upstream 76059 313710 ~ 315380 (-) True XLOC_020657
TCONS_00040856 lncRNA upstream 104688 342339 ~ 346253 (-) False XLOC_020658
TCONS_00040858 lncRNA upstream 108383 346034 ~ 346964 (-) True XLOC_020658
TCONS_00042229 lncRNA upstream 133913 371564 ~ 372054 (-) True XLOC_020661
TCONS_00040849 mRNA downstream 16196 208644 ~ 209741 (-) True XLOC_020651
TCONS_00040848 mRNA downstream 32703 191931 ~ 193234 (-) True XLOC_020650
TCONS_00040847 mRNA downstream 37825 184670 ~ 188112 (-) True XLOC_020649
TCONS_00040845 mRNA downstream 60993 158112 ~ 164944 (-) False XLOC_020648
TCONS_00040844 mRNA downstream 70310 130967 ~ 155627 (-) False XLOC_020647
TCONS_00040851 mRNA upstream 16739 254390 ~ 263117 (-) True XLOC_020653
TCONS_00040852 mRNA upstream 30701 268352 ~ 278328 (-) True XLOC_020654
TCONS_00040853 mRNA upstream 41139 278790 ~ 282498 (-) True XLOC_020655
TCONS_00040854 mRNA upstream 53440 291091 ~ 294700 (-) True XLOC_020656
TCONS_00040855 mRNA upstream 104339 341990 ~ 347424 (-) False XLOC_020658
TCONS_00040857 other upstream 107267 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040885 other upstream 575269 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040895 other upstream 920418 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040899 other upstream 992255 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 3357617 3595268 ~ 3680725 (-) True XLOC_020748

Expression Profile

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