RNA id: TCONS_00040853


Basic Information

Item Value
RNA id TCONS_00040853
length 555
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_020655
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 278790 ~ 282498 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGGGATGGAGAAATGGAGTGTTTCGGCCCGGCGGCCATTTACCTCCggaaaacagaaagagagagaatagAGGCCCAGAACACTCCCTTTGATGCCAAAACAGCGTACTTTGTGGTGGATGCAGACGAGATGTACCTGAAGGGTACTCTTCAGAGTAAAGAGGGTGGCAAAGCTACTGTCAAAACTCACAGTGGGAAAACCGTCACGGTAAAAGAAGATGAAATCTTCCCCATGAATCCTCCCAAGTTTGACAAAATTGAGGACATGGCCATGATGACCCACCTCAATGAGCCTTGTGTGCTGTATAACCTCAAAGAGCGTTACGCAGCATGGATGATCTATACCTACTCTGGCTTGTTCTGCGTCACTGTCAATCCATACAAATGGCTCCCAGTGTACGACGCAATCGTTGTGGCTGGATACAGAGGCAAGAAGAGGATTGAAGCCCCACCTCACATCTTCTCCATCTCTGACAACGCCTACCAGTTCATgctcgctcttgttggtcctcaatctggcaacctgagcTTACAttggaatgcaacagtttaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000182766

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040846 lncRNA downstream 117788 160577 ~ 161002 (-) True XLOC_020648
TCONS_00041934 lncRNA downstream 144451 132772 ~ 134339 (-) True XLOC_020647
TCONS_00042226 lncRNA downstream 177343 101082 ~ 101447 (-) True XLOC_020646
TCONS_00041933 lncRNA downstream 242674 27146 ~ 36116 (-) True XLOC_020641
TCONS_00042227 lncRNA upstream 31212 313710 ~ 315374 (-) False XLOC_020657
TCONS_00042228 lncRNA upstream 31212 313710 ~ 315380 (-) True XLOC_020657
TCONS_00040856 lncRNA upstream 59841 342339 ~ 346253 (-) False XLOC_020658
TCONS_00040858 lncRNA upstream 63536 346034 ~ 346964 (-) True XLOC_020658
TCONS_00042229 lncRNA upstream 89066 371564 ~ 372054 (-) True XLOC_020661
TCONS_00040852 mRNA downstream 462 268352 ~ 278328 (-) True XLOC_020654
TCONS_00040851 mRNA downstream 15673 254390 ~ 263117 (-) True XLOC_020653
TCONS_00040850 mRNA downstream 41139 225937 ~ 237651 (-) True XLOC_020652
TCONS_00040849 mRNA downstream 69049 208644 ~ 209741 (-) True XLOC_020651
TCONS_00040848 mRNA downstream 85556 191931 ~ 193234 (-) True XLOC_020650
TCONS_00040854 mRNA upstream 8593 291091 ~ 294700 (-) True XLOC_020656
TCONS_00040855 mRNA upstream 59492 341990 ~ 347424 (-) False XLOC_020658
TCONS_00040859 mRNA upstream 66623 349121 ~ 354592 (-) True XLOC_020659
TCONS_00040860 mRNA upstream 76775 359273 ~ 367569 (-) True XLOC_020660
TCONS_00040861 mRNA upstream 88417 370915 ~ 372723 (-) False XLOC_020661
TCONS_00040857 other upstream 62420 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040885 other upstream 530422 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040895 other upstream 875571 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040899 other upstream 947408 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 3312770 3595268 ~ 3680725 (-) True XLOC_020748

Expression Profile

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