RNA id: TCONS_00042228


Basic Information

Item Value
RNA id TCONS_00042228
length 972
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_020657
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 313710 ~ 315380 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCATACCTGATGTGAAAAGCTTGCACATCCTCAAAGATCCTTAGCACAAACAGTTATAATAGATAGTTTATATGAATGTTCAAGAAACTGAGGCAGATAAGGGAGATTCCACAGAAGGATGAATTCATTTATGCAATGAGTGAATAGATAAGTTGAGAGATTTCCAAGGTTTTAATTTGAGATTTGGTGTTTTAAAGTGTCCTTATGGAAGTACTAATCTTACTCCTCAACCTTAATCCTAGTAAACTCTGGGGTTACAAATCTTCAATAGATCTGTTTGAATTGATGATTTTTTAAAAGGTCTGGAATGACTGGTGTAGGTGGTGTTGATGCACAATGTGCTGTTGTGTGGAGGTGCTAATCACCAGTAGAAGACTGGGCTTCAATTAAGGCCTGTTTGCCCCCGGCCACCTTCCCTGCGTGCTGTCCAAGTGGACCCAGGGAGGCTGAATACTTACCACTCCCCCAAGTGACCTTTTGTTAACACCGCAAGGTTGCCCAGGCCACCCGAGAAGAGTCTGAAGATGTTTCTCTATGGGACCTACTCTGGCTAATCCAGAGACCAGGCTCCCCAGGACCCCAGATATCTCCAGGGAAGAGGAGAGCCCTGGCCCAAATCAGCTGAATCCAACAGGTAGATTCAGGAGGAAAAGTTGGCCATGAACTGGTCATTGCCTTCTCCTCACTCCCTGCTGATTTTCTCCAGAACACCTCCAGTCAACATCCAAGGAGTTCCATAAATCCAATATGATCAAAATCTCACCCAAATGTGACTGGAAGTATTCAAAGAGATAATCCTGACCTCCCACTAATTAATAGAAGTGAAAAATTTAAGAGGTCAGGTCGAGGTTCAGTCTGGCGGATATATCTCTGTAAATATATCATTCTTCTACCAAACGTCTCCCCTAAGGCAATGCAAGAACCAAGCAGACATCATCCTTATCAGGGATAACCGTTGGGAGCATTACCCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040846 lncRNA downstream 152708 160577 ~ 161002 (-) True XLOC_020648
TCONS_00041934 lncRNA downstream 179371 132772 ~ 134339 (-) True XLOC_020647
TCONS_00042226 lncRNA downstream 212263 101082 ~ 101447 (-) True XLOC_020646
TCONS_00041933 lncRNA downstream 277594 27146 ~ 36116 (-) True XLOC_020641
TCONS_00040856 lncRNA upstream 26959 342339 ~ 346253 (-) False XLOC_020658
TCONS_00040858 lncRNA upstream 30654 346034 ~ 346964 (-) True XLOC_020658
TCONS_00042229 lncRNA upstream 56184 371564 ~ 372054 (-) True XLOC_020661
TCONS_00042230 lncRNA upstream 77239 392619 ~ 394738 (-) False XLOC_020664
TCONS_00042233 lncRNA upstream 77239 392619 ~ 395900 (-) False XLOC_020664
TCONS_00040854 mRNA downstream 19010 291091 ~ 294700 (-) True XLOC_020656
TCONS_00040853 mRNA downstream 31212 278790 ~ 282498 (-) True XLOC_020655
TCONS_00040852 mRNA downstream 35382 268352 ~ 278328 (-) True XLOC_020654
TCONS_00040851 mRNA downstream 50593 254390 ~ 263117 (-) True XLOC_020653
TCONS_00040850 mRNA downstream 76059 225937 ~ 237651 (-) True XLOC_020652
TCONS_00040855 mRNA upstream 26610 341990 ~ 347424 (-) False XLOC_020658
TCONS_00040859 mRNA upstream 33741 349121 ~ 354592 (-) True XLOC_020659
TCONS_00040860 mRNA upstream 43893 359273 ~ 367569 (-) True XLOC_020660
TCONS_00040861 mRNA upstream 55535 370915 ~ 372723 (-) False XLOC_020661
TCONS_00040862 mRNA upstream 65763 381143 ~ 382955 (-) True XLOC_020662
TCONS_00040857 other upstream 29538 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040885 other upstream 497540 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040895 other upstream 842689 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040899 other upstream 914526 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 3279888 3595268 ~ 3680725 (-) True XLOC_020748

Expression Profile

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