RNA id: TCONS_00040858


Basic Information

Item Value
RNA id TCONS_00040858
length 672
lncRNA type retained_intron
GC content 0.55
exon number 3
gene id XLOC_020658
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 341990 ~ 347424 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCAGGGCTGCGGACTGGAAGCTGGATGAGCCGGCGTGGAGCGGTCGAATGAAGATCATAGCCAAGGGGAAAACAGCCTACATTAAACTAGAGGACAGAAAcacaggtgagCTGTTTGCTCAGGCTGCAGTGGAGCAGTACCCCAGCAGTGTGGTGGAGGCCGTGGTCGACTCCAGCCGGTATTTCGTCATCAGAATCGAGGATGGAAAcggacggCATGCCTTTATCGGCCTCGGGTTCGCAGACCGCGGAGACTCTTTCGACTTTAACGTCGCTCTGCAGGACCACtttaagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagaaagagactATGTGTCTGGCCTGCAAGGTTGATTCTCAtgatgtgcgtgcgtgcgtgcgtgcgtgcgtgtgtgcatgtgtgtgtgtgcgtgtgtgtttgtgcgcgtgtgtgcatatgtgtgtgtgtgtgtgtgtgtgtgtttgtgcgcgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcccgCAGGTGGGTGAAGCAGGAGAGTGATCTGGCCCGTCAGGAGGCCGTGCAGGACTCGGTGCCCAAACTGGACCTGGGCTTCAAAGAGGGTCAAACCATCAAGATCAACATAGGG

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030125 clathrin vesicle coat cellular_component
GO:0016020 membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-67 Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be part of clathrin vesicle coat. Orthologous to human NECAP2 (NECAP endocytosis associated 2).

Ensembl:

ensembl_id ENSDART00000153488

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042228 lncRNA downstream 30654 313710 ~ 315380 (-) True XLOC_020657
TCONS_00042227 lncRNA downstream 30660 313710 ~ 315374 (-) False XLOC_020657
TCONS_00040846 lncRNA downstream 185032 160577 ~ 161002 (-) True XLOC_020648
TCONS_00041934 lncRNA downstream 211695 132772 ~ 134339 (-) True XLOC_020647
TCONS_00042226 lncRNA downstream 244587 101082 ~ 101447 (-) True XLOC_020646
TCONS_00042229 lncRNA upstream 24600 371564 ~ 372054 (-) True XLOC_020661
TCONS_00042230 lncRNA upstream 45655 392619 ~ 394738 (-) False XLOC_020664
TCONS_00042233 lncRNA upstream 45655 392619 ~ 395900 (-) False XLOC_020664
TCONS_00042232 lncRNA upstream 45655 392619 ~ 395900 (-) False XLOC_020664
TCONS_00042231 lncRNA upstream 45655 392619 ~ 395900 (-) True XLOC_020664
TCONS_00040854 mRNA downstream 51334 291091 ~ 294700 (-) True XLOC_020656
TCONS_00040853 mRNA downstream 63536 278790 ~ 282498 (-) True XLOC_020655
TCONS_00040852 mRNA downstream 67706 268352 ~ 278328 (-) True XLOC_020654
TCONS_00040851 mRNA downstream 82917 254390 ~ 263117 (-) True XLOC_020653
TCONS_00040850 mRNA downstream 108383 225937 ~ 237651 (-) True XLOC_020652
TCONS_00040859 mRNA upstream 2157 349121 ~ 354592 (-) True XLOC_020659
TCONS_00040860 mRNA upstream 12309 359273 ~ 367569 (-) True XLOC_020660
TCONS_00040861 mRNA upstream 23951 370915 ~ 372723 (-) False XLOC_020661
TCONS_00040862 mRNA upstream 34179 381143 ~ 382955 (-) True XLOC_020662
TCONS_00040863 mRNA upstream 40109 387073 ~ 392224 (-) True XLOC_020663
TCONS_00040885 other upstream 465956 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040895 other upstream 811105 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040899 other upstream 882942 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 3248304 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 3964839 4311803 ~ 4313118 (-) True XLOC_020752

Expression Profile

//