RNA id: TCONS_00042229


Basic Information

Item Value
RNA id TCONS_00042229
length 491
lncRNA type sense_over
GC content 0.64
exon number 1
gene id XLOC_020661
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 370915 ~ 372723 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCCTGTGCGCCTACCGCAGTCTAGGCCCCGGTGATCCCGGGCGGCTCTGCTTCCGATACGCCCGGCCTGACTTCAGGTGTGCCAGCGGGTCCTGCCAACAGGTGAGCTCAGGGGACGGGCAGCTCACGGCAAACATACTGACCAATGGAAGCGTGTTCATCCAGTGGGCCCTCAGTGACTCTGTGGCCCCGCCGGGGCAGCCGGGCGGCTTCAGGCTCAGCTGCTGGTGGAACGGCAGCTACACACAGTTCGAATGCGGCGGGGTTCACTTCGGCAGCAGCTGCAGGGATTATTTACTCAATGAGCTGCACACTAACGTGCCCTACCGCCTCTGCATGCGGCCCTACGCCACAGACCGGGCCCAGGCCTGCGTGGAGTTCAGCCTGGCCCCCGGCGGGATGCAGGACATCGTGATCGCCATGACGACCGTGGGCGGGGCCATCTGTGTGATGCTGGTCATCATCTGTCTGCTGGTGGCGTACATTACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040858 lncRNA downstream 24600 346034 ~ 346964 (-) True XLOC_020658
TCONS_00040856 lncRNA downstream 25311 342339 ~ 346253 (-) False XLOC_020658
TCONS_00042228 lncRNA downstream 56184 313710 ~ 315380 (-) True XLOC_020657
TCONS_00042227 lncRNA downstream 56190 313710 ~ 315374 (-) False XLOC_020657
TCONS_00040846 lncRNA downstream 210562 160577 ~ 161002 (-) True XLOC_020648
TCONS_00042230 lncRNA upstream 20565 392619 ~ 394738 (-) False XLOC_020664
TCONS_00042233 lncRNA upstream 20565 392619 ~ 395900 (-) False XLOC_020664
TCONS_00042232 lncRNA upstream 20565 392619 ~ 395900 (-) False XLOC_020664
TCONS_00042231 lncRNA upstream 20565 392619 ~ 395900 (-) True XLOC_020664
TCONS_00040876 lncRNA upstream 241244 613298 ~ 616609 (-) False XLOC_020670
TCONS_00040860 mRNA downstream 3995 359273 ~ 367569 (-) True XLOC_020660
TCONS_00040859 mRNA downstream 16972 349121 ~ 354592 (-) True XLOC_020659
TCONS_00040855 mRNA downstream 24140 341990 ~ 347424 (-) False XLOC_020658
TCONS_00040854 mRNA downstream 76864 291091 ~ 294700 (-) True XLOC_020656
TCONS_00040853 mRNA downstream 89066 278790 ~ 282498 (-) True XLOC_020655
TCONS_00040862 mRNA upstream 9089 381143 ~ 382955 (-) True XLOC_020662
TCONS_00040863 mRNA upstream 15019 387073 ~ 392224 (-) True XLOC_020663
TCONS_00040864 mRNA upstream 100273 472327 ~ 506522 (-) False XLOC_020665
TCONS_00040865 mRNA upstream 101206 473260 ~ 506522 (-) True XLOC_020665
TCONS_00040866 mRNA upstream 165663 537717 ~ 547748 (-) False XLOC_020666
TCONS_00040857 other downstream 24150 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040885 other upstream 440866 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040895 other upstream 786015 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040899 other upstream 857852 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 3223214 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 3939749 4311803 ~ 4313118 (-) True XLOC_020752

Expression Profile

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