RNA id: TCONS_00040863


Basic Information

Item Value
RNA id TCONS_00040863
length 1035
RNA type mRNA
GC content 0.56
exon number 4
gene id XLOC_020663
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 387073 ~ 392224 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTACTACGGCAAAACCCCTGACCGTCTCGCAGCGCGCACTTTCATCTCCGCTCTATATCGCGTTTTACGTGATTCTGGTGCTGCTGGGGAACTTGGGGAACAGTTTGGTCATCGGGGTGGTTGGCGAGGGCCTTCTGCGGGAGCCGGGAGTCGCCCGCAGCTCTGATATTATCCTGGTCAACATGGCTTTATCCAACCTGATGGTGTCGTTGACGAGAAACTCTCTTCTGGTGATTTCCGACATGGGAGTGCAGGTTTTCCTCAATAGAAACTGGTGCCGCTTCATGATGGGCATCTGGGTTTGGGTCCGCTCTGCTAATGTCTGGTCGACGTTCTTTCTGAGCGCGTTTCACTTCCAGACTCTGCGTCGGGTCGCTCCTCCTGTCTCGAATGTGCACGGTCACCCCGGACCCCCACGATCCCTGATATTTGGCTTGTGCCTCATCTGGAGCCTCAACCTGATCTACTCCATCCCTGCCTTCATCTTCTCCAAGAACGGAGACGCAAACTCCACAGAGACGCTGATGTTGGTGAGCAGCACCACTCGGCCACTGCTGGGCTGCATCTGGAACTTTCCTTCAGCCTACAGTGGCCTGGCCTTCGCCACCTCCTCCATGATCCTCCATGAGTCCATCCCCATCTGCCTGATGAGTATCACCAACATGGGCTCCCTGTTGGCTCTGTATGCTCACGGTGAGGCTCGGAGAGCCGCCAAGAAGAGTTCGGATGCTCCGGTGGTCTCCCGCATCCCTGCAGAGCGACGGGCAGCAAAGGTGATTCTGGCGCTCAACATCCTCTTCATTCTGTCGTGGGGCACCAGCGTCATCTCTGTCAACTATTTCAACTATAACCGCGGATCGTCCACAGACTGGCTGCTCATCGCCGCTCGTATCGGCAACATCACCTTCATCGCACTTTCACCAATCGTCCTGGCCGTGGGACACCGGAGACTGCGAGCATTTCTAGCGTCAATCCTGACACATTCAATCGCTCTCTGTCGCCACCTATGGACATACAAGCTTCAGAAATGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000124720

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042229 lncRNA downstream 15019 371564 ~ 372054 (-) True XLOC_020661
TCONS_00040858 lncRNA downstream 40109 346034 ~ 346964 (-) True XLOC_020658
TCONS_00040856 lncRNA downstream 40820 342339 ~ 346253 (-) False XLOC_020658
TCONS_00042228 lncRNA downstream 71693 313710 ~ 315380 (-) True XLOC_020657
TCONS_00042227 lncRNA downstream 71699 313710 ~ 315374 (-) False XLOC_020657
TCONS_00042230 lncRNA upstream 395 392619 ~ 394738 (-) False XLOC_020664
TCONS_00042233 lncRNA upstream 395 392619 ~ 395900 (-) False XLOC_020664
TCONS_00042232 lncRNA upstream 395 392619 ~ 395900 (-) False XLOC_020664
TCONS_00042231 lncRNA upstream 395 392619 ~ 395900 (-) True XLOC_020664
TCONS_00040876 lncRNA upstream 221074 613298 ~ 616609 (-) False XLOC_020670
TCONS_00040862 mRNA downstream 4118 381143 ~ 382955 (-) True XLOC_020662
TCONS_00040861 mRNA downstream 14350 370915 ~ 372723 (-) False XLOC_020661
TCONS_00040860 mRNA downstream 19504 359273 ~ 367569 (-) True XLOC_020660
TCONS_00040859 mRNA downstream 32481 349121 ~ 354592 (-) True XLOC_020659
TCONS_00040855 mRNA downstream 39649 341990 ~ 347424 (-) False XLOC_020658
TCONS_00040864 mRNA upstream 80103 472327 ~ 506522 (-) False XLOC_020665
TCONS_00040865 mRNA upstream 81036 473260 ~ 506522 (-) True XLOC_020665
TCONS_00040866 mRNA upstream 145493 537717 ~ 547748 (-) False XLOC_020666
TCONS_00040867 mRNA upstream 147457 539681 ~ 547760 (-) True XLOC_020666
TCONS_00040868 mRNA upstream 158604 550828 ~ 557965 (-) True XLOC_020667
TCONS_00040857 other downstream 39659 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040885 other upstream 420696 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040895 other upstream 765845 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040899 other upstream 837682 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 3203044 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 3919579 4311803 ~ 4313118 (-) True XLOC_020752

Expression Profile

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