RNA id: TCONS_00042231


Basic Information

Item Value
RNA id TCONS_00042231
length 2756
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id XLOC_020664
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 392619 ~ 395900 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caaaatcaagtgaatttgtgaagcaggatttagtttgcttgtttagtttaaagctttttattttaaagcaatcaaactttaaaactcccaaagtgtgagtgtgtctttgtgtgtgtgtgagtgagactgAATAATGTGTAAGggaaaacaacagtgtgattgtacctgtgtgtgcgtctgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtaagagagagtgtaaaaacaattgcaacctatgtaatgtccccacaattcacaaaaatgagtgtgtgtgagagagagagagagagagagagagagagagagaactgtgtgtgtgagagtgtatgaatgtctgagagtggggagagagtgtacatttaggtgtgtgcagggcagtgtgtgtgtgagagagagagagagagagagagagagagagagagtatgtatgtgagtgaacatgctgaattatctcatcagtgaagggattttctggtaaaagggcctgacgatgtgagctcttgtaccatagaaactatttacagagaaaaacagtatcataagccatgtttcttttcgttctgcttaatcaagtaccccaaaaagatttttaaaataaacaaaacaattagtgtattttgactgctttctttaataactacattacacaatacttgtacttttactttcagtacttgagtagtaaattttgaaataaactacttgtaatacttaagtacaaaaaatgttgaatacttttgtacttccacttaagtatggtgcttaaagagcacttctacttctactcaagtcaatttttgataaagcacttgtacttttacttaagtatgggtctctagtactttatacatctctggtaacacaacaactatagtacttgatctgttgtggcgattctacagttgctatggtaacacaacaactatagtgactgatctgctgtggtgattctacagttgctatggtaacacaacaactatagtacctgatctgttgtggtgattctacagttgctatggtaacacaacaactatagtgactgatctgttgtggtgattctacagttgctatggtaacacaacaactatagtgactGATCTGCTGTggagattctacagttgctatggtaacacaacaactatagtaatataaacaaatgagtcAGTAGTGTAGTTGTCTACAGCTGTAGGGTATATTACACTGCTATACTCCACAGTTTACCGTAATTAAACTAAAGTACACTCCAGTCTATACTAACCCTGCGCCAATCATAATGGACCAATCATAACGGGTTAATTTCAATCTATCGACATGTGGAAGCGTCTTCATTATCTGATCACCGCTGTTTTCTCAACCatcttgtttgtttagtttttgaaatGAAAGATAATTCTGATTATTGAATCACGTTCATAAAACCACCAGTGGGAATTTATGCGCAATTCTATACAACTGCAGTTCACTGATTGGCCAGCGGTGGCGCCAACTAGCACAAGTTTCTGAATTCCACGCGCAGCCTCTTTAACTTTCCTCATAATATTAGCGTTAGCGTGTTTTACCTGTCGATGACTGTTTTGTCAGGTCGCCATGGAAACGGCCCAGATCCTGTTCCATTGCTTCTTCTACTGTAGGCGTTTGTGAGACACTGCGCGGAGGCGAGACATCTCTAAACTAGCTGAGTCTGCCTCTCACCACTTGTGACCTCTCGTGACGCAGACGGTCACCATGGCATGTCTTCAGCTGGCGTCTAAGATCGAGGAGGAGCCGCGGCGAGTTCAGGATGTGCTGAACGTCTTCCAACACCTCAGACACAGCATCTCCTGCAGAAACCCAAAAGAACCATGAATCTCCACTGTCACATCTGGCGCTCAAGAACGTCTGTCGAAAGATCTGGAGGAGAGACATGAAGCGCAGTGATGAGCGCCATAACACCCGCTGCATCCGGTCGTCTCCCAGACGCAGACGCAGACGCAGTGTCTCCTCTCCATCTACATCCCACAGACACTGACAGCGGGAGCAAGTGCTGAAAAAAGGATGATGTCATCAGGTGTAAAGGGGAGGGACCCAAAACCGACCAATCAGACCGCATCTGTAAACCCTCTTATGCTGCCAGTGTTGGGGAAGTTACTTGTAATAGTGTTAGATCGTGGTCTTGAGTTACTACTTTTCAAGGAAAGTAACGTGTAGCAGCATTTTTCAGTACTGTTTATATCTGGCCTGGGTTTGCCTGTTTGATGgaatataattaataaacaaacaagttttgAATGACTGAAGGAAAGGTAGATTCATGACTGCACAGTTGagctcaaacaaaacaaacaagcccTCAACTTTCTTCACAAGGTCAACATTTTCCGCGATGTTTACAGTATTCAGAGTTTTTCATTTCACAGCTGTTGTTCACTTTAAGGGACACTGTGACTCTCTTTGTGCAGGAGAGATGAGTAAACATGTTCACATGAAGCAGAACTACCTCTAGTAAGCACTATATAGACACATCTGACTTCTCCCGCCTCTGGAATTCATGTCAGACAGTACATGAGGGAAAATCAGTTTATTTTTCTTAAAGATGAACTCTGGATGAGTTTAATgtcattaattatttgtattgtgAGTTGTGAGCAATGCCTTACTAGTTACTTCacaaaagtaatctgattacataagTCACATTACACGTAGTGCATTAGCTCTGTACAGCCTTTTAAAAGACAAGAGTTTAATAAAATTCATCCCTTTTAAAA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0008608 attachment of spindle microtubules to kinetochore biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:1901988 negative regulation of cell cycle phase transition biological_process
GO:0000278 mitotic cell cycle biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042229 lncRNA downstream 20565 371564 ~ 372054 (-) True XLOC_020661
TCONS_00040858 lncRNA downstream 45655 346034 ~ 346964 (-) True XLOC_020658
TCONS_00040856 lncRNA downstream 46366 342339 ~ 346253 (-) False XLOC_020658
TCONS_00042228 lncRNA downstream 77239 313710 ~ 315380 (-) True XLOC_020657
TCONS_00042227 lncRNA downstream 77245 313710 ~ 315374 (-) False XLOC_020657
TCONS_00040876 lncRNA upstream 217398 613298 ~ 616609 (-) False XLOC_020670
TCONS_00040879 lncRNA upstream 221630 617530 ~ 621624 (-) True XLOC_020670
TCONS_00042234 lncRNA upstream 264017 659917 ~ 697504 (-) True XLOC_020672
TCONS_00042235 lncRNA upstream 304313 700213 ~ 704907 (-) True XLOC_020673
TCONS_00042236 lncRNA upstream 337344 733244 ~ 735244 (-) True XLOC_020675
TCONS_00040863 mRNA downstream 395 387073 ~ 392224 (-) True XLOC_020663
TCONS_00040862 mRNA downstream 9664 381143 ~ 382955 (-) True XLOC_020662
TCONS_00040861 mRNA downstream 19896 370915 ~ 372723 (-) False XLOC_020661
TCONS_00040860 mRNA downstream 25050 359273 ~ 367569 (-) True XLOC_020660
TCONS_00040859 mRNA downstream 38027 349121 ~ 354592 (-) True XLOC_020659
TCONS_00040864 mRNA upstream 76427 472327 ~ 506522 (-) False XLOC_020665
TCONS_00040865 mRNA upstream 77360 473260 ~ 506522 (-) True XLOC_020665
TCONS_00040866 mRNA upstream 141817 537717 ~ 547748 (-) False XLOC_020666
TCONS_00040867 mRNA upstream 143781 539681 ~ 547760 (-) True XLOC_020666
TCONS_00040868 mRNA upstream 154928 550828 ~ 557965 (-) True XLOC_020667
TCONS_00040857 other downstream 45205 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040885 other upstream 417020 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040895 other upstream 762169 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040899 other upstream 834006 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 3199368 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 3915903 4311803 ~ 4313118 (-) True XLOC_020752

Expression Profile

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