RNA id: TU1205764



Basic Information


Item Value
RNA id TU1205764
length 2718
RNA type TUCP
GC content 0.40
exon number 1
gene id G1058320
representative False

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 29800853 ~ 29803616 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaaaataaaagcagaGGCTATAACCTAGTTATTATAATAATTAGGCGATACATACGTGATGCACATTAAAAGGTTTTAAAACATAGTGAAAGGTAGGCCTACACTGTTTAAAAGCAGACAGGTTTGTGAATAGACAGTGAATCTTTAACATTACCATCTATAAATGGGGTTAAGACTCAGCATAAAGTATGAATGAATATAATAACCATTGATAGAGTTGAGAAATGATACATTTTATTTGGTGAAATGAAAATATGAAACCAATGCcaaaatctaaaacaaaattagtagtagttgtagtaggcaTAGTatcatcaaattaaatcaaatgttattggtcacatagataTATTTAGCAGATgaaacagtagcagtagtaggaggaggaggaagaggagaagtagtagtggtgatagatTAAGTAGTGGTAGAAGCAGTATCACTAAATAAACATTACCATTTCAGTTAGTCTAAATAACTTGGTAAAATAAATTGGTTAAGCCTAATAATTTGATTATGCTGAGATAGGGACAACATGCTAGAATTCAGCATGCACATGAGACTATCAATGGAAACATAAACCTGTTACATGCATATAAACACTATGGCATAAAATAGAACATCCCTGCTCCTTGTTCACCTGTCACTTGATTCCTCCCATCCCAGATTAGAAACGGTGCTTTACAAAAACACTATTTCCTTGCTCCCCTAGCTCAAAATGAAGTGGAATGTTCTGGACCACTGACAACCGGGTAAGTAATGTAACAATAATGTACTTGGTTGCCATGGTGACAGCAAAAATACGCAACAATTAAAGCACGCCAGGTGCACCCCCTGAATATCTTTTTCCTCATTCCCCTCTATTCACTCCATGACTCTCTTATGGTCCTTTGCCTTCCTCTTTTGCCATGGGCTCTCTCTCACATCCATGTCTTCCATATCACCTTCAATCTTTTCATAAACCTGTTTGATTCAGTCCATAGCTCATCGTACTCTGCCCCTGTTTAGCTCTCCTTTCCTCTTTGGCCACAATCTAGTCAGCTCTTTGTAACCGTCACCATAACAACCACAAATGTTCTGACAGATTTGCTGGTACTGCAttgagaggataagagagagagaggcagagacagaaagaaagaggcagagagagagaaagaggcagtgagagagaaagaggcagtgagagagaggagagctatCCACCCACAACCTTGCAACAACACATGTACTCGATGTTCTTCAATCATCTGAGACTCTTGACTTCTGATCTCCATTCCTCCCCCTGCCTATCATACACTGGCATCCTGTTCCTGTTGTGTTCTATAATTGCAGACCCATACCTAAGCCCTTTGAAAAAAGAAATACTCAGGTTCAGTATTATATCAACAAACACATTTGGTCAGTTGAGTATAGCAATGATCCAACATcataaaaatgtacttttaacattACAAGAGTGGTAATCCTTCAAATAGCTATGTCTCAAAGTCACTTGGAGCACATACAAGGCTCATAATGCATTAGTATAGATTATCATCTAGTGTTTAATTTTTTCTTCCTCCATTTTAACAGAGTTCAAATTCACTCTGtatcatctacagtgccttgcaaaagtattcggcccccttgaactttgcgaccttttgccacatttctggcttcaaacataaagatataaaattgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaactcttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaagagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctcttaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctgacctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcatgatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatcc

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1205726 lncRNA downstream 31739 29768898 ~ 29769114 (-) True G1058286
TU1205681 lncRNA downstream 43820 29745529 ~ 29757033 (-) True LOC110537390
TU1205678 lncRNA downstream 43885 29745529 ~ 29756968 (-) False LOC110537390
TU1205679 lncRNA downstream 43885 29745529 ~ 29756968 (-) False LOC110537390
TU1205674 lncRNA downstream 58928 29734074 ~ 29741925 (-) True G1058243
TU1205758 lncRNA upstream 63260 29866830 ~ 29867497 (-) True G1058317
TU1205795 lncRNA upstream 65566 29869136 ~ 29869484 (-) True G1058350
TU1205796 lncRNA upstream 66571 29870141 ~ 29870518 (-) True G1058351
TU1205797 lncRNA upstream 67188 29870758 ~ 29870998 (-) True G1058352
TU1205798 lncRNA upstream 67918 29871488 ~ 29871691 (-) True G1058353
XR_002475616.2 mRNA downstream 43858 29745513 ~ 29756995 (-) False LOC110537390
XM_021623396.2 mRNA downstream 118493 29679311 ~ 29682360 (-) True LOC110537384
XM_036939500.1 mRNA downstream 192394 29607637 ~ 29608459 (-) True LOC110536842
XM_036937355.1 mRNA downstream 327652 29465879 ~ 29473201 (-) True LOC110536839
LOC110536838 mRNA downstream 360023 29439620 ~ 29440830 (-) False LOC110536838
XM_021623421.2 mRNA upstream 39275 29842845 ~ 29852144 (-) True LOC110537401
XR_002475620.2 mRNA upstream 148128 29951698 ~ 29960420 (-) False LOC110537405
XM_021623418.2 mRNA upstream 162748 29966318 ~ 29968956 (-) True LOC110537397
XM_021623423.2 mRNA upstream 433777 30237347 ~ 30257703 (-) False LOC110537402
XM_021623416.2 mRNA upstream 466746 30270316 ~ 30304242 (-) False LOC110537396
TU1205421 other downstream 378538 29393595 ~ 29422315 (-) False LOC110537376
TU1205368 other downstream 532862 29267444 ~ 29267991 (-) True G1057998
TU1205134 other downstream 893834 28895616 ~ 28907019 (-) False LOC110537362
TU1205115 other downstream 900529 28895616 ~ 28900324 (-) False LOC110537362
TU1205835 other upstream 147985 29951555 ~ 29953654 (-) False LOC110537405
TU1206714 other upstream 531257 30334827 ~ 30335256 (-) True G1059183
TU1206775 other upstream 643822 30447392 ~ 30452213 (-) True LOC110537417
TU1206840 other upstream 831488 30635058 ~ 30636722 (-) True LOC110537425
TU1206894 other upstream 934506 30738076 ~ 30773807 (-) True LOC110537432

Expression Profile


TU1205764 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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TU1205764 Expression in each Bioproject

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TU1205764 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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