Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00040870 |
| length | 1029 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 3 |
| gene id | XLOC_020669 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 603382 ~ 607812 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0072331 | signal transduction by p53 class mediator | biological_process |
| GO:0007519 | skeletal muscle tissue development | biological_process |
| GO:0010165 | response to X-ray | biological_process |
| GO:0007050 | cell cycle arrest | biological_process |
| GO:0035904 | aorta development | biological_process |
| GO:0007346 | regulation of mitotic cell cycle | biological_process |
| GO:0035914 | skeletal muscle cell differentiation | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0004861 | cyclin-dependent protein serine/threonine kinase inhibitor activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| id | description |
|---|---|
| ko04012 | ErbB signaling pathway |
| ko04630 | JAK-STAT signaling pathway |
| ko04066 | HIF-1 signaling pathway |
| ko04068 | FoxO signaling pathway |
| ko04151 | PI3K-Akt signaling pathway |
| ko04110 | Cell cycle |
| ko04115 | p53 signaling pathway |
| ko04218 | Cellular senescence |
| ko04921 | Oxytocin signaling pathway |
| ko04928 | Parathyroid hormone synthesis, secretion and action |
| ko05200 | Pathways in cancer |
| ko05202 | Transcriptional misregulation in cancer |
| ko05206 | MicroRNAs in cancer |
| ko05205 | Proteoglycans in cancer |
| ko05203 | Viral carcinogenesis |
| ko05210 | Colorectal cancer |
| ko05212 | Pancreatic cancer |
| ko05225 | Hepatocellular carcinoma |
| ko05226 | Gastric cancer |
| ko05214 | Glioma |
| ko05216 | Thyroid cancer |
| ko05220 | Chronic myeloid leukemia |
| ko05217 | Basal cell carcinoma |
| ko05218 | Melanoma |
| ko05211 | Renal cell carcinoma |
| ko05219 | Bladder cancer |
| ko05215 | Prostate cancer |
| ko05213 | Endometrial cancer |
| ko05224 | Breast cancer |
| ko05222 | Small cell lung cancer |
| ko05223 | Non-small cell lung cancer |
| ko05166 | Human T-cell leukemia virus 1 infection |
| ko05161 | Hepatitis B |
| ko05160 | Hepatitis C |
| ko05163 | Human cytomegalovirus infection |
| ko05167 | Kaposi sarcoma-associated herpesvirus infection |
| ko05169 | Epstein-Barr virus infection |
| ko05165 | Human papillomavirus infection |
| ko04934 | Cushing syndrome |
| ko01524 | Platinum drug resistance |
| ko01522 | Endocrine resistance |
| id | description |
|---|---|
| ZDB-GENE-070705-7 | Predicted to enable cyclin-dependent protein serine/threonine kinase inhibitor activity and kinase activity. Acts upstream of or within aorta development; response to X-ray; and skeletal muscle cell differentiation. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; hatching gland; male organism; nervous system; and pectoral fin bud. Human ortholog(s) of this gene implicated in high grade glioma; ocular hypertension; oral mucosa leukoplakia; oral squamous cell carcinoma; and primary open angle glaucoma. Orthologous to human CDKN1A (cyclin dependent kinase inhibitor 1A). |
| ensembl_id | ENSDART00000136722 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00042233 | lncRNA | downstream | 207482 | 392619 ~ 395900 (-) | False | XLOC_020664 |
| TCONS_00042232 | lncRNA | downstream | 207482 | 392619 ~ 395900 (-) | False | XLOC_020664 |
| TCONS_00042231 | lncRNA | downstream | 207482 | 392619 ~ 395900 (-) | True | XLOC_020664 |
| TCONS_00042230 | lncRNA | downstream | 208644 | 392619 ~ 394738 (-) | False | XLOC_020664 |
| TCONS_00042229 | lncRNA | downstream | 231328 | 371564 ~ 372054 (-) | True | XLOC_020661 |
| TCONS_00040876 | lncRNA | upstream | 7231 | 613298 ~ 616609 (-) | False | XLOC_020670 |
| TCONS_00040879 | lncRNA | upstream | 11463 | 617530 ~ 621624 (-) | True | XLOC_020670 |
| TCONS_00042234 | lncRNA | upstream | 53850 | 659917 ~ 697504 (-) | True | XLOC_020672 |
| TCONS_00042235 | lncRNA | upstream | 94146 | 700213 ~ 704907 (-) | True | XLOC_020673 |
| TCONS_00042236 | lncRNA | upstream | 127177 | 733244 ~ 735244 (-) | True | XLOC_020675 |
| TCONS_00040869 | mRNA | downstream | 3366 | 591809 ~ 600016 (-) | True | XLOC_020668 |
| TCONS_00040868 | mRNA | downstream | 45417 | 550828 ~ 557965 (-) | True | XLOC_020667 |
| TCONS_00040867 | mRNA | downstream | 55622 | 539681 ~ 547760 (-) | True | XLOC_020666 |
| TCONS_00040866 | mRNA | downstream | 55634 | 537717 ~ 547748 (-) | False | XLOC_020666 |
| TCONS_00040864 | mRNA | downstream | 96860 | 472327 ~ 506522 (-) | False | XLOC_020665 |
| TCONS_00040872 | mRNA | upstream | 7198 | 613265 ~ 622937 (-) | False | XLOC_020670 |
| TCONS_00040873 | mRNA | upstream | 7198 | 613265 ~ 622967 (-) | False | XLOC_020670 |
| TCONS_00040874 | mRNA | upstream | 7206 | 613273 ~ 619711 (-) | False | XLOC_020670 |
| TCONS_00040875 | mRNA | upstream | 7206 | 613273 ~ 621711 (-) | False | XLOC_020670 |
| TCONS_00040877 | mRNA | upstream | 7555 | 613622 ~ 621888 (-) | False | XLOC_020670 |
| TCONS_00040857 | other | downstream | 255968 | 344918 ~ 347414 (-) | False | XLOC_020658 |
| TCONS_00040885 | other | upstream | 206853 | 812920 ~ 817407 (-) | True | XLOC_020678 |
| TCONS_00040895 | other | upstream | 552002 | 1158069 ~ 1159749 (-) | False | XLOC_020686 |
| TCONS_00040899 | other | upstream | 623839 | 1229906 ~ 1230022 (-) | True | XLOC_020689 |
| TCONS_00040924 | other | upstream | 2989201 | 3595268 ~ 3680725 (-) | True | XLOC_020748 |
| TCONS_00040930 | other | upstream | 3705736 | 4311803 ~ 4313118 (-) | True | XLOC_020752 |
