RNA id: TU1206714



Basic Information


Item Value
RNA id TU1206714
length 430
RNA type TUCP
GC content 0.44
exon number 1
gene id G1059183
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 30334827 ~ 30335256 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccactcctcagtaaaaggcacatgacagcccgcttggagtttgccaaaaggcacctaaagactgtcacaccatgagaaataagattatctggtctgatgaaaacaagattgaacactttcgcttgaatgccaagcgttacgtctggaggaaacctgacaccatccctacgggaaagcatggtggtggcagcatcatgctgtggggatgtttttcagaggcagcgactgggagactagtcaggattgaggcaaagatgaacagatcaaagtacagagagatccttgatgaaaacctgcttcagctCAACAGCTCAGACTGGGGACAAGGTTCACCtccaggtctgaatacttacgtaaatgtcatatttaagttttttatttgcaaacatttctaaaaaacctaGTTTTTctgtgtcattatgggatattg

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1206689 lncRNA downstream 1945 30330970 ~ 30332882 (-) True G1059160
TU1206698 lncRNA downstream 78523 30256078 ~ 30256304 (-) True G1059168
TU1206696 lncRNA downstream 80354 30254184 ~ 30254473 (-) True G1059166
TU1206695 lncRNA downstream 81230 30253329 ~ 30253597 (-) True G1059165
TU1206694 lncRNA downstream 88895 30245622 ~ 30245932 (-) True G1059164
TU1206677 lncRNA upstream 4773 30340029 ~ 30345459 (-) False G1059154
TU1206679 lncRNA upstream 4773 30340029 ~ 30343160 (-) False G1059154
TU1206680 lncRNA upstream 4773 30340029 ~ 30341733 (-) True G1059154
TU1206716 lncRNA upstream 14387 30349643 ~ 30349889 (-) True G1059185
TU1206719 lncRNA upstream 20242 30355498 ~ 30355800 (-) True G1059188
XM_021623428.2 mRNA downstream 11683 30307875 ~ 30323144 (-) True LOC110537406
XM_021623427.2 mRNA downstream 11684 30307875 ~ 30323143 (-) False LOC110537406
XM_021623426.2 mRNA downstream 12298 30307875 ~ 30322529 (-) False LOC110537406
XM_021623416.2 mRNA downstream 30585 30270316 ~ 30304242 (-) False LOC110537396
XM_021623417.2 mRNA downstream 30585 30270316 ~ 30304242 (-) False LOC110537396
XM_021623432.2 mRNA upstream 12095 30347351 ~ 30361671 (-) False LOC110537410
XM_021623430.2 mRNA upstream 12095 30347351 ~ 30369324 (-) False LOC110537410
XM_021623431.2 mRNA upstream 12095 30347351 ~ 30369324 (-) True LOC110537410
XM_021623433.2 mRNA upstream 34911 30370167 ~ 30380619 (-) True LOC110537411
XM_021623434.2 mRNA upstream 82786 30418042 ~ 30422519 (-) False si:ch1073-143l10.2
TU1205835 other downstream 381173 29951555 ~ 29953654 (-) False LOC110537405
TU1205763 other downstream 531211 29800853 ~ 29803616 (-) False G1058320
TU1205764 other downstream 531257 29800853 ~ 29803570 (-) False G1058320
TU1205421 other downstream 912512 29393595 ~ 29422315 (-) False LOC110537376
TU1205368 other downstream 1066836 29267444 ~ 29267991 (-) True G1057998
TU1206775 other upstream 112136 30447392 ~ 30452213 (-) True LOC110537417
TU1206840 other upstream 299802 30635058 ~ 30636722 (-) True LOC110537425
TU1206894 other upstream 402820 30738076 ~ 30773807 (-) True LOC110537432
TU1207180 other upstream 732329 31067585 ~ 31070860 (-) True G1059610
TU1209063 other upstream 1655954 31991210 ~ 31992555 (-) False G1061331

Expression Profile


TU1206714 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
End of interactive chart.

TU1206714 Expression in each Bioproject

Bar chart with 20 bars.
TU1206714 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.