RNA id: TCONS_00042234


Basic Information

Item Value
RNA id TCONS_00042234
length 795
lncRNA type read_through
GC content 0.60
exon number 4
gene id XLOC_020672
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 659917 ~ 697504 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGGCACTGCTCTGCAGGACAGGTCCCCCATCAGCCTCCTCTTGGTCAGCTCATTGAAGATGACCACCGGCAGGCAGAAGAACAGCACCATGAAGTCCCAGAAGGCCAGGCTGGCCAGCACGCAGTTCCAGGTGCTCTTCAGGTAATAGTTGTGCCACACGATACACATGAGCGCCAGGTTTCCCACGATGCCCACGGAGAACACGATCAGCGCCAGCAGCAGCACGGCGTAGGCGCTGTAGGACTCGTCGGTGACCGGGAACAGCGGGTTGTGGAGGCGCAGCGCGCCGCTGAAGGGCCGCGGGGTGGTGAAGAAAGTGTCCGCCTCCGGGTGCGCTCTCGGCGGCTGCGGCTCCGAGCGCTCCCGCGGTCTGGATTTGGAACCGCGCGGCACTCTCGCGCTCGGTTCTCCGCCTGGATGGAGGCTGCGAGCGCCATCAGGACCAGTAAAGCGCTCAGCATCATGATGGAGCAGAGTTGTGAAGCGGAGGATGGAAATCTGCAGTCTGAGAGGCTCTGAACAAACTCTCAAACTTCTGCTTTCACTTCATCATCCATGAGGAGCGACAGGCGCAAAGCTGCCCCCTGGCGGAGCGCGCACACATGACACAGTGTTCAGCATAAGCTGAGCAACAGCTTCAGACTTCAAGAACTTGAAGACGCCGTCCCTGCGGTCCTCCCACTTCATCAGCCCCTGGTTCTGCTCCGGGTGGATCAGGATATCCCGGATGAACTCCCACAGgtTTCGGTTTGgtgctgtttctgtgtgtttattttgcgTCTCCACACATGGCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040879 lncRNA downstream 38293 617530 ~ 621624 (-) True XLOC_020670
TCONS_00040876 lncRNA downstream 43308 613298 ~ 616609 (-) False XLOC_020670
TCONS_00042233 lncRNA downstream 264017 392619 ~ 395900 (-) False XLOC_020664
TCONS_00042232 lncRNA downstream 264017 392619 ~ 395900 (-) False XLOC_020664
TCONS_00042231 lncRNA downstream 264017 392619 ~ 395900 (-) True XLOC_020664
TCONS_00042235 lncRNA upstream 2709 700213 ~ 704907 (-) True XLOC_020673
TCONS_00042236 lncRNA upstream 35740 733244 ~ 735244 (-) True XLOC_020675
TCONS_00042237 lncRNA upstream 41796 739300 ~ 760886 (-) True XLOC_020676
TCONS_00042238 lncRNA upstream 320841 1018345 ~ 1022428 (-) False XLOC_020684
TCONS_00042240 lncRNA upstream 320841 1018345 ~ 1023531 (-) False XLOC_020684
TCONS_00040880 mRNA downstream 8198 641342 ~ 651719 (-) True XLOC_020671
TCONS_00040873 mRNA downstream 36950 613265 ~ 622967 (-) False XLOC_020670
TCONS_00040872 mRNA downstream 36980 613265 ~ 622937 (-) False XLOC_020670
TCONS_00040877 mRNA downstream 38029 613622 ~ 621888 (-) False XLOC_020670
TCONS_00040875 mRNA downstream 38206 613273 ~ 621711 (-) False XLOC_020670
TCONS_00040881 mRNA upstream 13255 710759 ~ 718615 (-) True XLOC_020674
TCONS_00040882 mRNA upstream 72497 770001 ~ 775776 (-) False XLOC_020677
TCONS_00040883 mRNA upstream 72497 770001 ~ 784110 (-) True XLOC_020677
TCONS_00040884 mRNA upstream 115344 812848 ~ 817479 (-) False XLOC_020678
TCONS_00040886 mRNA upstream 122152 819656 ~ 834106 (-) True XLOC_020679
TCONS_00040857 other downstream 312503 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040885 other upstream 115416 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040895 other upstream 460565 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040899 other upstream 532402 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 2897764 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 3614299 4311803 ~ 4313118 (-) True XLOC_020752

Expression Profile

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