RNA id: TCONS_00040882


Basic Information

Item Value
RNA id TCONS_00040882
length 832
RNA type mRNA
GC content 0.52
exon number 4
gene id XLOC_020677
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 770001 ~ 784110 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggagcgGACGCAGCGGAGGATGAGGAGGTGGACGTCACATCAGTCGACCCCATTCCTGCATTCTGCAGCAGTGACGAGGAGCTGGAGGACTATAAAGCTCTGCTGTATCTGCCGATCGCCCCGGAGGTTGAGGACCCAGAGGAGAACCCATTTGGCCCCCCGCCTGACGCCACGGCTCAGAACGCCAGCACTGACGACGGCTCCACCCACACCGGCCCCGGTGACAAGAAACGACACCCGTCAGCAGACGGAGCACCACCGAAGAAGAAGATCCGCACCACCACCATCGAGCTGCAGGGCGTCCCAAGCGACGAGGTGCACCCGCTGCTTGGCGTAAAAGGCGACAGTAAGTCGAAGAAGAAGGCGGCGGGGCGACCCAAGGGATCTAAAGGTAAAGACAAAGACTCTCCGTTCAGACCCAAAGTCAGCCGGGACAGAGTAGAGGGGCTGGGGACGCCAGgaaacctGGTCGCAGCGGTGTACAAACAGCACGAGGTGCAGGGTCTGGACTGAAGCTGAAGGCCATTGGCGCCCCCTGTTTGAGTGGATGAATGACTTTTTATGAACTCTATGGACTGGAATTGTTGTATAATTTCAGAAGGACTTAAACGCCGCAACCGATTGATTGGTTTCCACACATAGAGTGAGTGTTGGAAAGATCGaagcatgtttttttattgttttatatctaGAATAGATGGATCTGTCTCAGTCTACAAGCACTAGTTGGGTCATAGTCAGATATCTTATATTtgttttgtgtgctttttttccTGTGAGCTCTCTTGACTGGtcttttgtttataaatattaaaccAGCTTGTTTTTTTGA

Function

GO:

id name namespace
GO:0048188 Set1C/COMPASS complex cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
ko04934 Cushing syndrome
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-886 Part of protein-containing complex. Orthologous to human RBBP5 (RB binding protein 5, histone lysine methyltransferase complex subunit).

Ensembl:

ensembl_id ENSDART00000149749

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042237 lncRNA downstream 9115 739300 ~ 760886 (-) True XLOC_020676
TCONS_00042236 lncRNA downstream 34757 733244 ~ 735244 (-) True XLOC_020675
TCONS_00042235 lncRNA downstream 65094 700213 ~ 704907 (-) True XLOC_020673
TCONS_00042234 lncRNA downstream 72497 659917 ~ 697504 (-) True XLOC_020672
TCONS_00040879 lncRNA downstream 148377 617530 ~ 621624 (-) True XLOC_020670
TCONS_00042238 lncRNA upstream 242569 1018345 ~ 1022428 (-) False XLOC_020684
TCONS_00042240 lncRNA upstream 242569 1018345 ~ 1023531 (-) False XLOC_020684
TCONS_00042239 lncRNA upstream 242569 1018345 ~ 1023531 (-) True XLOC_020684
TCONS_00042241 lncRNA upstream 380654 1156430 ~ 1168255 (-) False XLOC_020686
TCONS_00042242 lncRNA upstream 406308 1182084 ~ 1182479 (-) True XLOC_020687
TCONS_00040881 mRNA downstream 51386 710759 ~ 718615 (-) True XLOC_020674
TCONS_00040880 mRNA downstream 118282 641342 ~ 651719 (-) True XLOC_020671
TCONS_00040877 mRNA downstream 148113 613622 ~ 621888 (-) False XLOC_020670
TCONS_00040875 mRNA downstream 148290 613273 ~ 621711 (-) False XLOC_020670
TCONS_00040878 mRNA downstream 148392 616769 ~ 621609 (-) False XLOC_020670
TCONS_00040884 mRNA upstream 37072 812848 ~ 817479 (-) False XLOC_020678
TCONS_00040886 mRNA upstream 43880 819656 ~ 834106 (-) True XLOC_020679
TCONS_00040887 mRNA upstream 81093 856869 ~ 866196 (-) True XLOC_020680
TCONS_00040888 mRNA upstream 90905 866681 ~ 881080 (-) False XLOC_020681
TCONS_00040889 mRNA upstream 93824 869600 ~ 881725 (-) False XLOC_020681
TCONS_00040857 other downstream 422587 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040885 other upstream 37144 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040895 other upstream 382293 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040899 other upstream 454130 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 2819492 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 3536027 4311803 ~ 4313118 (-) True XLOC_020752

Expression Profile

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