RNA id: TCONS_00040884


Basic Information

Item Value
RNA id TCONS_00040884
length 843
RNA type mRNA
GC content 0.49
exon number 3
gene id XLOC_020678
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 812848 ~ 817479 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attaatattcatgaggcgGGCCTTCGACGTAGTAGCGCTAGATCTGCATCCTGCATTGAGCGCCACGTCGCAGCAGCAGCAAAACACCGATGATTCCCGCACATCTGACGGGCAACCAGGACACAAAACCTGCGGGGAAAACAGCGTAAACATGGTGAAGagtGTGAATTCACAAACTGAGTCCAGGAGTGAAACATATGAAGGAGAGGAGGCTGAAAACACTGAAAACCAGCCGTCTGCAGATGGCGGTAAAGAGCACCCGACAGCTCCGACCGGGATGATCTGGCGTGTCACTGGCGGCCTCTTCAGCGCCACCAAGGGCGTGGTTGGAGCCACAGTGGGCGGAGTCACCTGGCTGGGCGGGAAAAGTTTGGAGATCACCAAATCAGCTGTGACCGCAGTGCCCTCGGTGGGCGTCAGCCTGGTGAAGGGCGGAGTTTCTGCAGTGGCAGGGGGCGTGTCCACAGTGGGGTCAACGGTAGCCAATAAAGTTCCATTCACAGGAAAGAGGAAGGACAAATCAGAGTGAAGAAGAGGACTACGATGAATAAAATACCGTTTGATTTCCACGCTGGACACCAGAGACACTGACTGATGTTCTCCACCGCCATATTTGATTTGGTTATAATCACGTAAGAagagctctgtggaaatagtTTGGGTTTTTCACAAATGATCTCAGATCTGCGACTAAAGACACGTTTACTTGTCGTGGTTTTGGCCGACACCGAACACTATTTCACCATCTCCTGTAGCTGATTTCATCTGATGTTGTCGGTCAGATTATGtttgtaaattacattttttattatttgaatataataaaGTCATGTTAAAGAAGTT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2155 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM263 (transmembrane protein 263).

Ensembl:

ensembl_id ENSDART00000123487

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042237 lncRNA downstream 51962 739300 ~ 760886 (-) True XLOC_020676
TCONS_00042236 lncRNA downstream 77604 733244 ~ 735244 (-) True XLOC_020675
TCONS_00042235 lncRNA downstream 107941 700213 ~ 704907 (-) True XLOC_020673
TCONS_00042234 lncRNA downstream 115344 659917 ~ 697504 (-) True XLOC_020672
TCONS_00040879 lncRNA downstream 191224 617530 ~ 621624 (-) True XLOC_020670
TCONS_00042238 lncRNA upstream 200866 1018345 ~ 1022428 (-) False XLOC_020684
TCONS_00042240 lncRNA upstream 200866 1018345 ~ 1023531 (-) False XLOC_020684
TCONS_00042239 lncRNA upstream 200866 1018345 ~ 1023531 (-) True XLOC_020684
TCONS_00042241 lncRNA upstream 338951 1156430 ~ 1168255 (-) False XLOC_020686
TCONS_00042242 lncRNA upstream 364605 1182084 ~ 1182479 (-) True XLOC_020687
TCONS_00040883 mRNA downstream 28738 770001 ~ 784110 (-) True XLOC_020677
TCONS_00040882 mRNA downstream 37072 770001 ~ 775776 (-) False XLOC_020677
TCONS_00040881 mRNA downstream 94233 710759 ~ 718615 (-) True XLOC_020674
TCONS_00040880 mRNA downstream 161129 641342 ~ 651719 (-) True XLOC_020671
TCONS_00040877 mRNA downstream 190960 613622 ~ 621888 (-) False XLOC_020670
TCONS_00040886 mRNA upstream 2177 819656 ~ 834106 (-) True XLOC_020679
TCONS_00040887 mRNA upstream 39390 856869 ~ 866196 (-) True XLOC_020680
TCONS_00040888 mRNA upstream 49202 866681 ~ 881080 (-) False XLOC_020681
TCONS_00040889 mRNA upstream 52121 869600 ~ 881725 (-) False XLOC_020681
TCONS_00040890 mRNA upstream 54552 872031 ~ 876506 (-) True XLOC_020681
TCONS_00040857 other downstream 465434 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040895 other upstream 340590 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040899 other upstream 412427 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 2777789 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 3494324 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 4001931 4819410 ~ 4899294 (-) False XLOC_020764

Expression Profile

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