RNA id: TCONS_00042239


Basic Information

Item Value
RNA id TCONS_00042239
length 4544
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id XLOC_020684
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1018345 ~ 1023531 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCCCAAGTCCCTCAAAACCTTGAGTTTCCCCCAAGGCTCTAAAAACACCCAGATTTTCTTAGCAAGACTCTAAAAAGGACCCAGATTATTccccaaaacacacacaacaccCAGATTATTACCAAAGACTCTAAAAACATCTAGACTTTCCCAACAAGACTCTCAAAACACCCAGATTACTCCACAAGACACCTAAAACACCCAGATTATTccctaatacacttaaaacacCCAGATAACTCCACAAGACTCTGAAAACATTGAAATTTTCCACTAAGACTCTCAAAACACCCAGATTATTCCCCAATACACTTAAAACACCCAGATTATTCACAAAGACTCTTAAAACACCCAGATTATCCCCCTAAAATACTGAAAACACCCAGATTATTCCCAAAGACTGTCAAAACATTGAGATTTTCCACCAAGGCTCTCGAAATACCCCGATTATTCCCAAAGATTCTCAAAAAAACCCAGATTTTTCCCAGCAAGACTCTCAAAACACTGAGATTACTCCACAAGACTCTGAAAACATTGAAATTTTCCACTAAGACTCTCAAAACACCCAGATTATTCCCCAATACACTTAAAACACCCAGATTATTCACAAAGACTGTCAAAACATTGAGATTTTTCACCAAGACTATCAAAACACCCAGTTTACTCCACAAAACTCTCAGAAAACACAGATTTTCCCAGCAAGGCTCTAAAACAGCCAGGTTATCCCCCAAAACTGAGTAGCATAATCTTTTAAATATCTgattaaaaatgtgcttaaacTCAGCTGTAACCCCTGTTAATAGTGAGTAAACTTTGCGCATGAGCTTCATCAGTGAGCGTGCTTATATCCGTGAgtccgtcatcacagtgcttcagtattcttcttcttctattattattattctctccaGAACATGAGCATCTGTCTCGATTTTGTTCTCTTGTTTCTCATTGGATGAAAATGTTTTAAGTAATACTGCTCGAATTGGATAGGTCTTATTTCCCACACCCGCTCTAAAACCAGCACTTACCTGATAAATAAGCCCTGTGTGAGATGTTCATTTACAAAAACACAGCCAAAAACCAATCAGCATGTGACGTTTGACCCTGTAGTTTTATTCAGCTGctcttcagatgttttacaaaagcGTTCGGTCGCTCAGATGGAAGAATCGTTCACATTTCCAGGAAACAGGAAGACATGGACACAACACACAGATTCGGCATGTCATGTGGACAGGAAGCAGTTAGCAGCACTCACAGGAAATGACCTCACACTGAGGCCTAATGTGGAAAGGTTAAAGGTGGCATACGTGAACATGGCTTTACATGAGGATATGCTCGACCGCAGCCTCTGATTCAGAAAACTACCTAACAAAactgttattaaataatattaataaaactctGGAGTCAGATAATCAATCAGCGATCTGAACTCGGATATACATGCGATCACAGCATCAtttcacagaaataaaaataattataataggaAACGTTTGAGGTTTGCGAGTTGTTTTAATGTTGTTCAGGTGTGAAAAACCAGCTTAAAGCGATTATGACTAGCAAATAATTTGGTTTACGGAAATTTTTTATCAGAAATTCAGATGTTTAAAGTGCAAATGATTGTTTTGATTCATAAAAAAGTCAACAGATATTTTTTGGCAGAGCGAAAACTCAGTTTCAAGCGTAATTTTGTAATGAAAGGCATCTAAAAATAATGCTGCATTCTCAGAGTCACCACAAGGGGCGCTAGCAGACATTAGCACAATTTAACAAAACGAATCAGAAGGttagttaaagttagtttaaACTGTCGACATGTAGATACTAGTCCTTAGGAAAACACATCTTGCTTAATAATAGTTACTTTAAAAGAAGCTACGACGATGTTTTCAGCACTGAGGATTGTTCCCATGAAACATACATTTCAATTGCGTAGTGTTTTTGGCAGCACAACAAAAAGACAGGCTAGTAAAGCTCAACGACTAGCTTGTGGACCGACTCAAAACAAAGAGAGTAAATAATAACGATTTTACTACTAGCAGCAACCTTTGGTACTTCAGTTGGCGAGATAGCGTTTGTCGCGTTATCATGCGTAGGCATTTTTTCTTATTGATAATGACGATTTTGTCACAGGATTTACTAAAAATTTTTATACATGCTAATAAAAGGAATGCTGTGGTGCTATTTAAAGCTAAAGAAAAATTTCACCGACGTCTCTTTGATCTGCAAAAACTCTGTTTTGCTTTATTGTAGAAAACTGGTTCGCTTTTTAGAGTTCAGTTCGAAATCCTGGGTTCGCGTAGAAAACTTTCTAACAAGTGCTAAatcttttcttcttttattttagaggtgaactatctgctttCGCATTCAGTATAACGAAAAATGTCACTTAAAATGGTTCAAACTCACATTAGTAGCatataacactgaataaagcacataaccAGCACCTGAGGTGATCATCATCATCGtagtttatgttgttgtttggccACGACACCtcaaaaatagaaaacatttctaaaataaaactttCGCGCATCgaatgtttacaatatttttagtAGAGTCCTTTAAACATAGACTCCTTTCAACGTGGAAAAgatagcttttaatcatgtgtcGCAGCGTCGCATGTAGTTTGAAAACAGTGTAATGCGGACTTCACACCAAACGTAAACTTTAGTACTACAATTATATAGAAGCGAATTTGCATCACATGACCCGAATCATGTAAAACGCACAATGCATCTGTTTTTTGCCTCAtttgcaatacaaaaaaaaattcaactccAACCAAAAGTTTGCACGAGGTGGAAAACATCCCTCGAGTAATCTATATTAATCGCACAATTTTAACtttgcatttggtgtgaaccagTTTCACTGACGACCTGCACAAACTTATCATTCTACTGAAGAAAACTCTGTCTCTTATCAGTTTATTTCAAAATCCTGGATATGCGTAGAAAacgtttcaatgtttttttttaattatgtgttttgaggtgaactatttgCTAGTGCTTTCAGTATAacaataaatgtcacgtaaaatggtattcaaactcacattagtagcatttaacactgactAAAGCACATCATCCGCACCTGAGGTGATCTTTGTCATCGTAGTTCATGTTGTTGTTTGGCTACGATGCCTCAAATCtagaaaattttttttaaataaaaatctcgCACATCGAATGTTTAGAACATTTTTAGTCCTTTTAACGTAGAATAGATAGCTTTAAATTGTGTCGCAGCGTCGCATTTAGTTCGGAAACAGTGAAATGCTGACCTCACACCAAATTTAAACTTAAATACTACAATTATATAGAAGCGAATTTGCATGACACAATACGAATCATACAAAATGTGCAATGCATCTGTTATTTGCCTCAACTGCAATGAACAAAAATTAAACTTGAGCAAAAAAATTGCACAAGGTGAAAAACATCCCTCAAGTAATCTGTAATAATCGCGCAATTTTAACTTTGCGTTTAGTGCGAACCAGTTTCACTGACGACCTGCACAAACTTATAACTCTAATGCAGAAAACTCCGTCTTTTTTTAGAGTTTAGTTCATAATCCTGGGTTTGCGTAGAAAACGTTCCAATGTTTTTTAACTATAtgtttgctacttattttattttctaaatctgaggtgaactatctggtTTCAGTATAacaataaatgtcacgtaaaatggtATTCAAACCCACAttagtagcatttaacactgaataaagcacatcatcAGCACCTGAGGTGATCATCGTCATCGTAGTTCATGTTGTTGTTTGGCCATGGCGCCtcaaaaattgaaaatatttccaaaactaaaacatttcgCACACTAAATGTTTAGAACATTGTTGGTAGATTCCTTTTAACATAGACTCCTTTCAACATGGAAAAGATAGCTTTAAATTGTGTTTCAGCGTCGCatgtagttttaaataaatttaagtacTATAATTATATAGAAGCGAATTTGCATCACACAACACAAATCATACAAAATGCGTAATGCATCTGTTATTCGCCTCAATAAAAAATTTGCACGAGTTGAATAACACCCTGCGAGTAATCGATAACAATCACACCCTGTTAACTTTGCGTTTAGTGTGAAACAGTTTTACTTACGACCTGCACAACGCTCCATTGCAGAACACTCTGTCTCTTTTTAAGAGTTCAGTTCAAAATCCTCACTTCACGTAGAAATAAGGGTTTCTCCGGATGGTATCTCCACGGTTGATTGGACAGGCAGTCAGTACATGTCCCTGTAGATCTCCTGCAGCAGCGGGTGCAGCGAGGTCTCGGACTCCGTCTTCTTGATCTTTTGCACCAGCTGAGCGTTCTCCGTCACCAGCTGCCGCAGGTCCGCCAGCTTCTGCAGCAGTCTGGGGAAGATGAAGCGTCCGTCGGGATGATTGAGCTGCAGGTGCTGATTCAGGGCCTGGAGGATGCTGTCCTGGATCTTTTCCACCTGATGGACGTTCATGAGGCCTGGACGATCTATAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042237 lncRNA downstream 257459 739300 ~ 760886 (-) True XLOC_020676
TCONS_00042236 lncRNA downstream 283101 733244 ~ 735244 (-) True XLOC_020675
TCONS_00042235 lncRNA downstream 313438 700213 ~ 704907 (-) True XLOC_020673
TCONS_00042234 lncRNA downstream 320841 659917 ~ 697504 (-) True XLOC_020672
TCONS_00040879 lncRNA downstream 396721 617530 ~ 621624 (-) True XLOC_020670
TCONS_00042241 lncRNA upstream 132899 1156430 ~ 1168255 (-) False XLOC_020686
TCONS_00042242 lncRNA upstream 158553 1182084 ~ 1182479 (-) True XLOC_020687
TCONS_00042243 lncRNA upstream 237419 1260950 ~ 1269440 (-) True XLOC_020690
TCONS_00042244 lncRNA upstream 243460 1266991 ~ 1290856 (-) True XLOC_020691
TCONS_00042245 lncRNA upstream 292197 1315728 ~ 1316773 (-) True XLOC_020692
TCONS_00040893 mRNA downstream 49861 912450 ~ 968484 (-) True XLOC_020683
TCONS_00040891 mRNA downstream 107419 898131 ~ 910926 (-) False XLOC_020682
TCONS_00040892 mRNA downstream 111588 901585 ~ 906757 (-) True XLOC_020682
TCONS_00040889 mRNA downstream 136620 869600 ~ 881725 (-) False XLOC_020681
TCONS_00040894 mRNA upstream 49882 1073413 ~ 1079773 (-) True XLOC_020685
TCONS_00040896 mRNA upstream 141125 1164656 ~ 1168291 (-) True XLOC_020686
TCONS_00040897 mRNA upstream 182256 1205787 ~ 1237003 (-) False XLOC_020688
TCONS_00040898 mRNA upstream 182256 1205787 ~ 1245226 (-) True XLOC_020688
TCONS_00040900 mRNA upstream 297460 1320991 ~ 1359856 (-) True XLOC_020693
TCONS_00040885 other downstream 200938 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 670931 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040895 other upstream 134538 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040899 other upstream 206375 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 2571737 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 3288272 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 3795879 4819410 ~ 4899294 (-) False XLOC_020764