RNA id: TCONS_00040894


Basic Information

Item Value
RNA id TCONS_00040894
length 918
RNA type mRNA
GC content 0.53
exon number 6
gene id XLOC_020685
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1073413 ~ 1079773 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAGATACAGGAAGCTGAAGATTCAGCCAATAGGGTGAGACTTTCCACTGACAAACTAGCCAATCAAATCAAGCAGGCGCGAGCCGATGTGGACGGAGACCTGAAGGACACCAAAGACTTCATAAACACTCTGAGGGACTTTCTGTCCGACCCTCAGTCAGACCCGGATCAGGTGCAGCGTGTGTGTGACGGCGTTCTGGAGGCTCAGTTTCCCGCCAGTGTGGAGAATCTGAAGAAGAAGCTGAAGGAGATTCAGGATGCGATGAAGTCTGTTCCTGATAGCAGTGGAGCTCTGGAGGATAGCAGAGCACAGCTGGAGGAGGCTAAACAACTCCTGAAGAGAGCTATAAACACACGTGACGCAGCGTTTGGCATCCAGCAGGACGCGGAGAGCATTCTGAAGACCATGGACGAAAACGAGAACATTTTGGACGACCTGAAGGACAAAATCAATCAAAGCGGAACCATTGCGGAAAACGTCAAGAAGGACATTCAGCAGATTGAGGATGCTCTGACTCCCGCAGAGCAGGGGATTGTGGGTATCCCAGAGCTGCTGGATGAGATGCGCCCCCTGCTGGACTCACTCAAAACAGACTTGCCAACAGGAAAAACGCTCGCAAACGATGCTCAAAAACAGGCGAATTTAGCTCAAGACGAGGCCGACCGCGCCGCAGAGGATCTGGAGGAGCTGAAGCAGGCGCTGGAGCAGATGAAGCTGGCGGCGGCTGAAAACACTCAAGCTGGAGAAGATTCAGTGCGTCTGCTGAACCTGCAGAAGGAGGCGGAGTCTCTGATGACGGACACTTCTGACATCATCAAGGCACTGAAAGATAAAGAGGTGTCGATACAGCAGAGAGCGGCAGACATCGAAGGGAACAGCACTCGTCTGCTCGGGCTGGACGCTCAGGTGGAGAAGC

Function

GO:

id name namespace
GO:0043010 camera-type eye development biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0007411 axon guidance biological_process
GO:0005604 basement membrane cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-69 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in several processes, including animal organ development; axon guidance; and blood vessel morphogenesis. Predicted to be active in basement membrane. Human ortholog(s) of this gene implicated in amelogenesis imperfecta type 1A; junctional epidermolysis bullosa; junctional epidermolysis bullosa Herlitz type; junctional epidermolysis bullosa non-Herlitz type; and lung small cell carcinoma. Orthologous to human LAMB3 (laminin subunit beta 3).

Ensembl:

ensembl_id ENSDART00000136668

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042240 lncRNA downstream 49882 1018345 ~ 1023531 (-) False XLOC_020684
TCONS_00042239 lncRNA downstream 49882 1018345 ~ 1023531 (-) True XLOC_020684
TCONS_00042238 lncRNA downstream 50985 1018345 ~ 1022428 (-) False XLOC_020684
TCONS_00042237 lncRNA downstream 312527 739300 ~ 760886 (-) True XLOC_020676
TCONS_00042236 lncRNA downstream 338169 733244 ~ 735244 (-) True XLOC_020675
TCONS_00042241 lncRNA upstream 76657 1156430 ~ 1168255 (-) False XLOC_020686
TCONS_00042242 lncRNA upstream 102311 1182084 ~ 1182479 (-) True XLOC_020687
TCONS_00042243 lncRNA upstream 181177 1260950 ~ 1269440 (-) True XLOC_020690
TCONS_00042244 lncRNA upstream 187218 1266991 ~ 1290856 (-) True XLOC_020691
TCONS_00042245 lncRNA upstream 235955 1315728 ~ 1316773 (-) True XLOC_020692
TCONS_00040893 mRNA downstream 104929 912450 ~ 968484 (-) True XLOC_020683
TCONS_00040891 mRNA downstream 162487 898131 ~ 910926 (-) False XLOC_020682
TCONS_00040892 mRNA downstream 166656 901585 ~ 906757 (-) True XLOC_020682
TCONS_00040889 mRNA downstream 191688 869600 ~ 881725 (-) False XLOC_020681
TCONS_00040888 mRNA downstream 192333 866681 ~ 881080 (-) False XLOC_020681
TCONS_00040896 mRNA upstream 84883 1164656 ~ 1168291 (-) True XLOC_020686
TCONS_00040897 mRNA upstream 126014 1205787 ~ 1237003 (-) False XLOC_020688
TCONS_00040898 mRNA upstream 126014 1205787 ~ 1245226 (-) True XLOC_020688
TCONS_00040900 mRNA upstream 241218 1320991 ~ 1359856 (-) True XLOC_020693
TCONS_00040902 mRNA upstream 1795065 2874838 ~ 2886937 (-) True XLOC_020737
TCONS_00040885 other downstream 256006 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 725999 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040895 other upstream 78296 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040899 other upstream 150133 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 2515495 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 3232030 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 3739637 4819410 ~ 4899294 (-) False XLOC_020764

Expression Profile

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