RNA id: TCONS_00042242


Basic Information

Item Value
RNA id TCONS_00042242
length 346
lncRNA type antisense_over
GC content 0.31
exon number 2
gene id XLOC_020687
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1182084 ~ 1182479 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acaaatcaacaatcaaacacacaagatgacacacaaacacaaacacacacacacggaagcATATACAGATGCTAACACAGACACTACACAAAACACACAGCGCACCCAAAACAGACAAATATACACAGAAACAAACATAACTTTACAAACACACAACGTACACACACTTATTTCCTCATTTACTTTTATGAATCAGTTCCTAccgttatttatatttaataaaaataaatccaaaataaaaaagcaccaaaaataaacacacactttcatcttgtttttctttttttttatttgtatttataaatcCATACATTACGGGACAAATCTACACACTAGCACATCAAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042241 lncRNA downstream 13829 1156430 ~ 1168255 (-) False XLOC_020686
TCONS_00042240 lncRNA downstream 158553 1018345 ~ 1023531 (-) False XLOC_020684
TCONS_00042239 lncRNA downstream 158553 1018345 ~ 1023531 (-) True XLOC_020684
TCONS_00042238 lncRNA downstream 159656 1018345 ~ 1022428 (-) False XLOC_020684
TCONS_00042237 lncRNA downstream 421198 739300 ~ 760886 (-) True XLOC_020676
TCONS_00042243 lncRNA upstream 78471 1260950 ~ 1269440 (-) True XLOC_020690
TCONS_00042244 lncRNA upstream 84512 1266991 ~ 1290856 (-) True XLOC_020691
TCONS_00042245 lncRNA upstream 133249 1315728 ~ 1316773 (-) True XLOC_020692
TCONS_00042246 lncRNA upstream 180861 1363340 ~ 1365341 (-) True XLOC_020694
TCONS_00042247 lncRNA upstream 258199 1440678 ~ 1457344 (-) True XLOC_020695
TCONS_00040896 mRNA downstream 13793 1164656 ~ 1168291 (-) True XLOC_020686
TCONS_00040894 mRNA downstream 102311 1073413 ~ 1079773 (-) True XLOC_020685
TCONS_00040893 mRNA downstream 213600 912450 ~ 968484 (-) True XLOC_020683
TCONS_00040891 mRNA downstream 271158 898131 ~ 910926 (-) False XLOC_020682
TCONS_00040892 mRNA downstream 275327 901585 ~ 906757 (-) True XLOC_020682
TCONS_00040897 mRNA upstream 23308 1205787 ~ 1237003 (-) False XLOC_020688
TCONS_00040898 mRNA upstream 23308 1205787 ~ 1245226 (-) True XLOC_020688
TCONS_00040900 mRNA upstream 138512 1320991 ~ 1359856 (-) True XLOC_020693
TCONS_00040902 mRNA upstream 1692359 2874838 ~ 2886937 (-) True XLOC_020737
TCONS_00040903 mRNA upstream 1713032 2895511 ~ 2922053 (-) False XLOC_020739
TCONS_00040895 other downstream 22335 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 364677 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 834670 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040899 other upstream 47427 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 2412789 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 3129324 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 3636931 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 3645477 4827956 ~ 4899294 (-) False XLOC_020764