RNA id: TU1212267


Basic Information

Item Value
RNA id TU1212267
length 206
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1064266
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 34822961 ~ 34823166 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttcattgtctgcttatgtgCCCCCTTTTTTTATCTTACGGTTCTGAcctggtgtacagggagaacactaagtacggcccatgttctgaattctgtcgctgtacatttcaaaagtgcttcacaaatagttatattgactgcGTCCTTCCTAGCTCACTCAATGTTAAtggaaattacggattgcctcttctccgcttgttgtcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1212265 lncRNA downstream 1062 34821683 ~ 34821899 (-) True G1064264
TU1212261 lncRNA downstream 3587 34819066 ~ 34819374 (-) True G1064263
TU1212260 lncRNA downstream 4328 34817541 ~ 34818633 (-) True G1064262
TU1212257 lncRNA downstream 8151 34814207 ~ 34814810 (-) True G1064259
TU1212127 lncRNA downstream 63795 34757254 ~ 34759166 (-) True cenpv
TU1212248 lncRNA upstream 138435 34961601 ~ 34962931 (-) True LOC110537503
TU1212670 lncRNA upstream 246438 35069604 ~ 35069817 (-) True G1064628
TU1212671 lncRNA upstream 246887 35070053 ~ 35070338 (-) True G1064629
TU1212700 lncRNA upstream 284220 35107386 ~ 35107862 (-) True G1064658
TU1212707 lncRNA upstream 291856 35115022 ~ 35115247 (-) True G1064664
XM_021623581.2 mRNA downstream 15286 34805721 ~ 34807675 (-) False LOC110537499
XR_002475637.2 mRNA downstream 15299 34805721 ~ 34807662 (-) False LOC110537499
XM_021623582.2 mRNA downstream 15303 34805721 ~ 34807658 (-) False LOC110537499
XM_036937465.1 mRNA downstream 15321 34805721 ~ 34807640 (-) False LOC110537499
XM_021623570.2 mRNA downstream 63616 34757230 ~ 34759345 (-) False cenpv
XM_021623585.2 mRNA upstream 38259 34861425 ~ 34937347 (-) False LOC110537500
XM_021623589.2 mRNA upstream 38259 34861425 ~ 34937348 (-) False LOC110537500
XM_021623586.2 mRNA upstream 38259 34861425 ~ 34948985 (-) False LOC110537500
XM_021623583.2 mRNA upstream 38259 34861425 ~ 34949931 (-) False LOC110537500
XM_021623587.2 mRNA upstream 38259 34861425 ~ 34949931 (-) False LOC110537500
TU1212198 other downstream 15330 34805759 ~ 34807631 (-) False LOC110537499
TU1212199 other downstream 15330 34805759 ~ 34807631 (-) False LOC110537499
TU1212200 other downstream 15330 34805759 ~ 34807631 (-) True LOC110537499
TU1212126 other downstream 63795 34757254 ~ 34759166 (-) False cenpv
TU1210670 other downstream 1115302 33706472 ~ 33707659 (-) True LOC110537478
TU1212669 other upstream 396369 35219535 ~ 35260534 (-) True LOC110537509
TU1212981 other upstream 653671 35476837 ~ 35484504 (-) True G1064912
TU1214124 other upstream 969189 35792355 ~ 35810394 (-) True G1065969
TU1214216 other upstream 1116077 35939243 ~ 35939571 (-) True G1066054
TU1214327 other upstream 1275864 36099030 ~ 36099474 (-) True G1066163

Expression Profile