RNA id: TCONS_00040900



Basic Information


Item Value
RNA id TCONS_00040900
length 270
RNA type mRNA
GC content 0.44
exon number 13
gene id XLOC_020693
representative True

Chromosome Information


Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1320991 ~ 1359856 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ctcaaagcacacaaactctctcacaccaTTAAAAACCACCACAAAcctgaccagtgttgctcttataggCTAAAAGCTTCTAagttggcggttcacttccgtgatttgatcagaagtgaaccgtaccagaTCtgtttgtgtgtaaagcgctttacgCACAGAGAACACGAGAGTAAGCATCAAGGGATTCGGACCTGtgtgaatccgtTCATGTGTTTTCAGtgtgaacacttAGATTTGCCTTTGGCTCACCTATTTCTTCACAACAGA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000182641

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00042245 lncRNA downstream 4218 1315728 ~ 1316773 (-) True XLOC_020692
TCONS_00042244 lncRNA downstream 30135 1266991 ~ 1290856 (-) True XLOC_020691
TCONS_00042243 lncRNA downstream 51551 1260950 ~ 1269440 (-) True XLOC_020690
TCONS_00042242 lncRNA downstream 138512 1182084 ~ 1182479 (-) True XLOC_020687
TCONS_00042241 lncRNA downstream 152736 1156430 ~ 1168255 (-) False XLOC_020686
TCONS_00042246 lncRNA upstream 3484 1363340 ~ 1365341 (-) True XLOC_020694
TCONS_00042247 lncRNA upstream 80822 1440678 ~ 1457344 (-) True XLOC_020695
TCONS_00042248 lncRNA upstream 90002 1449858 ~ 1453031 (-) True XLOC_020696
TCONS_00042249 lncRNA upstream 121627 1481483 ~ 1589655 (-) True XLOC_020697
TCONS_00042250 lncRNA upstream 138034 1497890 ~ 1525556 (-) False XLOC_020698
TCONS_00040898 mRNA downstream 75765 1205787 ~ 1245226 (-) True XLOC_020688
TCONS_00040897 mRNA downstream 83988 1205787 ~ 1237003 (-) False XLOC_020688
TCONS_00040896 mRNA downstream 152700 1164656 ~ 1168291 (-) True XLOC_020686
TCONS_00040894 mRNA downstream 241218 1073413 ~ 1079773 (-) True XLOC_020685
TCONS_00040893 mRNA downstream 352507 912450 ~ 968484 (-) True XLOC_020683
TCONS_00040902 mRNA upstream 1514982 2874838 ~ 2886937 (-) True XLOC_020737
TCONS_00040903 mRNA upstream 1535655 2895511 ~ 2922053 (-) False XLOC_020739
TCONS_00040904 mRNA upstream 1537417 2897273 ~ 2929156 (-) False XLOC_020739
TCONS_00040905 mRNA upstream 1551510 2911366 ~ 2929127 (-) True XLOC_020739
TCONS_00040906 mRNA upstream 1571484 2931340 ~ 2937503 (-) False XLOC_020740
TCONS_00040899 other downstream 90969 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 161242 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 503584 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 973577 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040924 other upstream 2235412 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 2951947 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 3459554 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 3468100 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 3538730 4898586 ~ 4899116 (-) True XLOC_020764