RNA id: TCONS_00042247


Basic Information

Item Value
RNA id TCONS_00042247
length 835
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id XLOC_020695
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1440678 ~ 1457344 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagtgtggatcttctcaTGATGTCTCAAACCGGTCTGCTGTTTAAAGCGCTTCCCACACTCAGGACACGAATAAGGCCTCTCATTTGTATGAACTCTAAGATGGTCCCTTAGCTGTGAAGCCCAAAAGAAAGTCTTGTCGCATTGATCACATCTGtgcggcctctctccagtgtggatcagccGGTGCTGCTTAAGCTGGTTTAGTTGTCTGAAATTCTCCCCGCACTGAGCACACGTGTACGGTCTCCCTCCAGTGTGGACCagcatgtgttgattaaggtgtggagagtctctgaaactcttcccgcactgagtACATACGTGTgttttctctccggtgtggatcatcGTGTGTCGATTAAGTTGGTACAACTGTctgaaactcttctcacactgcGTACATccgaatggtttctctccggtgtgaatcagCGCGTGTCGTCTAAGGTGGTGGGATTTTCTGAAACTCGCCCCGCATTGAGCACACGTGtgtggtctctctccagtgtggaccagcatgtgttgattaagggaggATAACTGTCTGAAGCTCGTCCCACACTGGGCACATgagtacggtttctctccggtgtggatcatcatgtgctGTTTAAGTCTTGATAGTCGTCTGAAACCCGTCCCACACTCGGTgcatgtgtacggtttctctccgctGTGAATCATCATGTGACGGTTAAACGTCTTTTTGCACGACAGACTCTTCCCGCACTCAGTGCAGATTAAACATTGCTTGTATTTTGTCTTCTCTTCACATGTGTGCTCCTGTGGTTTAGACATGACGGTGCGTCTGAAATAAAGGTAAGAACACTGCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042246 lncRNA downstream 75337 1363340 ~ 1365341 (-) True XLOC_020694
TCONS_00042245 lncRNA downstream 123905 1315728 ~ 1316773 (-) True XLOC_020692
TCONS_00042244 lncRNA downstream 149822 1266991 ~ 1290856 (-) True XLOC_020691
TCONS_00042243 lncRNA downstream 171238 1260950 ~ 1269440 (-) True XLOC_020690
TCONS_00042242 lncRNA downstream 258199 1182084 ~ 1182479 (-) True XLOC_020687
TCONS_00042249 lncRNA upstream 24139 1481483 ~ 1589655 (-) True XLOC_020697
TCONS_00042250 lncRNA upstream 40546 1497890 ~ 1525556 (-) False XLOC_020698
TCONS_00042251 lncRNA upstream 66388 1523732 ~ 1525556 (-) True XLOC_020698
TCONS_00042252 lncRNA upstream 148321 1605665 ~ 1608245 (-) True XLOC_020699
TCONS_00042253 lncRNA upstream 225313 1682657 ~ 1809866 (-) True XLOC_020700
TCONS_00040900 mRNA downstream 80822 1320991 ~ 1359856 (-) True XLOC_020693
TCONS_00040898 mRNA downstream 195452 1205787 ~ 1245226 (-) True XLOC_020688
TCONS_00040897 mRNA downstream 203675 1205787 ~ 1237003 (-) False XLOC_020688
TCONS_00040896 mRNA downstream 272387 1164656 ~ 1168291 (-) True XLOC_020686
TCONS_00040894 mRNA downstream 360905 1073413 ~ 1079773 (-) True XLOC_020685
TCONS_00040902 mRNA upstream 1417494 2874838 ~ 2886937 (-) True XLOC_020737
TCONS_00040903 mRNA upstream 1438167 2895511 ~ 2922053 (-) False XLOC_020739
TCONS_00040904 mRNA upstream 1439929 2897273 ~ 2929156 (-) False XLOC_020739
TCONS_00040905 mRNA upstream 1454022 2911366 ~ 2929127 (-) True XLOC_020739
TCONS_00040906 mRNA upstream 1473996 2931340 ~ 2937503 (-) False XLOC_020740
TCONS_00040899 other downstream 210656 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 280929 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 623271 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 1093264 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040924 other upstream 2137924 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 2854459 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 3362066 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 3370612 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 3441242 4898586 ~ 4899116 (-) True XLOC_020764