RNA id: TU1214216



Basic Information


Item Value
RNA id TU1214216
length 329
RNA type TUCP
GC content 0.52
exon number 1
gene id G1066054
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 35939243 ~ 35939571 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaACAGAGtgaagtacagagatccttgatgaaaacctgctccagagagttcagaacctcagactggggcgaaggttcaccttccaacaggacaacgaccctaagcatacagccaagacaatgcagtagtggcttcgggacaagtctgagTGTCCTtgcgtggcccagccagagcccggacttgaacccgatcaaacatcttaggagagacctgaagatagctgtgcagcgacgctccccatccaacctgacagagcttgagaggatctgcagagaagaatgggagaaactccccaaatacaggtgtgccaagcttgtagcgtcataccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1214120 lncRNA downstream 67317 35787323 ~ 35871926 (-) True G1065967
TU1214030 lncRNA downstream 273353 35665680 ~ 35665890 (-) True G1065884
TU1214026 lncRNA downstream 279192 35659847 ~ 35660051 (-) True G1065880
TU1214023 lncRNA downstream 282836 35656066 ~ 35656407 (-) True G1065877
TU1213137 lncRNA downstream 351048 35587962 ~ 35588195 (-) True G1065063
TU1214225 lncRNA upstream 12220 35951791 ~ 35952032 (-) True G1066063
TU1214227 lncRNA upstream 16098 35955669 ~ 35955876 (-) True G1066065
TU1214228 lncRNA upstream 17227 35956798 ~ 35957102 (-) True G1066066
TU1214230 lncRNA upstream 19492 35959063 ~ 35959315 (-) True G1066068
TU1214329 lncRNA upstream 163149 36102720 ~ 36103228 (-) True G1066165
XM_021623603.2 mRNA downstream 538016 35396884 ~ 35401227 (-) True LOC110537510
XM_021623602.2 mRNA downstream 680306 35122172 ~ 35258937 (-) False LOC110537509
XM_021623601.2 mRNA downstream 824438 35071760 ~ 35114805 (-) True LOC110537508
XM_021623596.2 mRNA downstream 924970 34979146 ~ 35014273 (-) False LOC110537504
XM_021623620.2 mRNA upstream 353136 36292707 ~ 36310874 (-) True LOC110537516
XM_021623621.2 mRNA upstream 371544 36311115 ~ 36358022 (-) False LOC110537517
XM_036937475.1 mRNA upstream 371544 36311115 ~ 36358023 (-) True LOC110537517
XM_021623622.2 mRNA upstream 458027 36397598 ~ 36400542 (-) True LOC110537518
XR_002475871.2 mRNA upstream 472681 36412252 ~ 36413564 (-) False LOC110539141
TU1214124 other downstream 128849 35792355 ~ 35810394 (-) True G1065969
TU1212981 other downstream 454739 35476837 ~ 35484504 (-) True G1064912
TU1212669 other downstream 678709 35219535 ~ 35260534 (-) True LOC110537509
TU1212198 other downstream 1131612 34805759 ~ 34807631 (-) False LOC110537499
TU1214327 other upstream 159459 36099030 ~ 36099474 (-) True G1066163
TU1215682 other upstream 969860 36909431 ~ 36912757 (-) True G1067390
TU1215723 other upstream 997748 36937319 ~ 36937979 (-) True G1067426
TU1215774 other upstream 1080430 37020001 ~ 37030684 (-) True LOC110537534
TU1216092 other upstream 1566309 37505880 ~ 37507144 (-) True LOC110537540

Expression Profile