RNA id: TU1214329


Basic Information

Item Value
RNA id TU1214329
length 509
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1066165
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 36102720 ~ 36103228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccgtcattgtaaataagaatttgttcttaactggcttgcctagttaaataaatttaaaaatcAGTCTTGGCAGTGTAAAGTCATAGGTCATAAACCAACATACACATCTCAGAATGGCTATGGCAGTTTTAAACTATTCAAGAACCTAGACACTTGGTTGGAGCACCTAGTCAATGTAGAGTAATTTCTCTCAGTCCACTTTGCACCATTGTATACTATGTGAGAGACAAAACCACTTAACATTTACTGTCACTTGTCCCCTTGACTCATGCTGAGAGATGTTCTTTAACTggtgttaaaggtccaatgcagccattttttatCTAAATACctaatcatttctgggtaacaataagTACTTTACTGTAATTGTCTTAGCTAagtgcaatttctcaagcaataatgtagctaggactgtctgggagtggtctgagtggggaggggaaaatgaaaactagctgttattggcagagaggtttggaactctttcttactggtctatatacagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1214230 lncRNA downstream 143405 35959063 ~ 35959315 (-) True G1066068
TU1214228 lncRNA downstream 145618 35956798 ~ 35957102 (-) True G1066066
TU1214227 lncRNA downstream 146844 35955669 ~ 35955876 (-) True G1066065
TU1214225 lncRNA downstream 150688 35951791 ~ 35952032 (-) True G1066063
TU1214120 lncRNA downstream 230794 35787323 ~ 35871926 (-) True G1065967
TU1214341 lncRNA upstream 17266 36120494 ~ 36175599 (-) True G1066177
TU1214346 lncRNA upstream 21017 36124245 ~ 36129844 (-) True G1066181
TU1214376 lncRNA upstream 81483 36184711 ~ 36187509 (-) True G1066209
TU1214419 lncRNA upstream 154462 36257690 ~ 36257910 (-) True G1066247
TU1214420 lncRNA upstream 155018 36258246 ~ 36258474 (-) True G1066248
XM_021623603.2 mRNA downstream 701493 35396884 ~ 35401227 (-) True LOC110537510
XM_021623602.2 mRNA downstream 843783 35122172 ~ 35258937 (-) False LOC110537509
XM_021623601.2 mRNA downstream 987915 35071760 ~ 35114805 (-) True LOC110537508
XM_021623596.2 mRNA downstream 1088447 34979146 ~ 35014273 (-) False LOC110537504
XM_021623620.2 mRNA upstream 189479 36292707 ~ 36310874 (-) True LOC110537516
XM_021623621.2 mRNA upstream 207887 36311115 ~ 36358022 (-) False LOC110537517
XM_036937475.1 mRNA upstream 207887 36311115 ~ 36358023 (-) True LOC110537517
XM_021623622.2 mRNA upstream 294370 36397598 ~ 36400542 (-) True LOC110537518
XR_002475871.2 mRNA upstream 309024 36412252 ~ 36413564 (-) False LOC110539141
TU1214327 other downstream 3246 36099030 ~ 36099474 (-) True G1066163
TU1214216 other downstream 163149 35939243 ~ 35939571 (-) True G1066054
TU1214124 other downstream 292326 35792355 ~ 35810394 (-) True G1065969
TU1212981 other downstream 618216 35476837 ~ 35484504 (-) True G1064912
TU1212669 other downstream 842186 35219535 ~ 35260534 (-) True LOC110537509
TU1215682 other upstream 806203 36909431 ~ 36912757 (-) True G1067390
TU1215723 other upstream 834091 36937319 ~ 36937979 (-) True G1067426
TU1215774 other upstream 916773 37020001 ~ 37030684 (-) True LOC110537534
TU1216092 other upstream 1402652 37505880 ~ 37507144 (-) True LOC110537540
TU1216102 other upstream 1499937 37603165 ~ 37607015 (-) False LOC110537546

Expression Profile