RNA id: TU1214513


Basic Information

Item Value
RNA id TU1214513
length 5765
lncRNA type antisense_over
GC content 0.39
exon number 3
gene id G1066335
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 36467498 ~ 36473377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCAACTCATATGTTACATGGAGGTCCAGTTTGACTGGCCATGACTAGTTTCACAGGCACCTATGGAGACGGGTCAGAGTCAGACAGTACGAGTTGATTtcagaggagagcgagagaaccAAAAGAGCTCAAACAAACACCACATCAGAGTGATACATAGCATGCACATGGCACATTTACATATGATCATCACCTCCAGGACATTTATGGCActtggtgtcaaaggaaggccaagaagatcattagGGACCTCAGCCACACAAGCCACggtctgttcactctgctaccatctaGCAGACAGAGAaggtacaggtgcatcagagcCAGGACCGAGACaatgagaaacagcttctatcacaaggccatcagactgttgaacagccattACTAGCCGTCTACCTGCCAGGTACTCTGCATGGTGAGACTAATGAACCATGTACAGAGAGACATTGAACTCTGGTCATTTCATATACTGTTGTTTACTcactatgtatatactgtattctcgaCATAGCTCATCCTAATATACCTAATACTGTACATACCATTTTATTTTCAAAATTAtaaactgtctatacacaccacgtATTAACATTTATATTCTGGATTCTGACACTGCTCACTATCTACTTTGGATTGTTAATTGGACTCGTTCTGACATTTTTTTATACTTTTTTCattatttgtgtattagtatTGTATTTGCTagacattctactgcactgttggagctagtaacatcaGCATTTCACATCTCTGTACACGACCAATACGTTTTTATTTGATTATCATCATTATCGACTCCTTTCATCAATCATCATCTCGGTAGCTTCCATTTGGCATGTTAACACAGTAGGACAACAGATCTAATGGTCTCTAGAGACACACACAGTATGACATGGGGCCTAGCAGAGGACAGGGTGGGAAGGAAATTGAGTAACAGAGGATGGTTACATGAATGAAGTCTCCAACCTTCCAGAGCTTAGAGAGATATCACACGGAACGCCAAAGCAGAGCTGCATTACAATGCAACGTTGAAACAAATGTGACATGGATTCAGCTACAATTAATCAGACAATGAAGACTAGTGCTTGGTTTAATATGGTATTTAAAAGGATATGGACATTGGACACAATATAATTTCAGATAAAAAATGTTCACCTCATACACTTGTCAATTCTCTCCCCGTGAACTGTAACAAAGCGTACCTCCTAATTGTGAGGGCTTAGTGCAGTCTGAACATAGTtggcaaaatgtgaagagtatggCAACATCAAAAATATGACTGAATATTTGAACTGAAACCAACAGTGTAAGGTAAAAACATTAAGCACATGGTCAAAAAATAAATACTGAAATAAAATGCGGATGTACAGGTAGATAATGTAAGGAAGCACCTTAATAAGGACATGGCAATTTTGAATGCCTAGCATTAGCATAGCCTAGCATTACAGTCTAGACTCACAGAAGGCTATAACAACAAGAGTTAAGAGCGCAACATAAAATAACAAAAGCAACAGATAAATATTAAAAGGGTAAGCAAACGTCCCTGAACCCTTAAAGTCAATGTACTGTAACTTGTGTGACACATGAACCTGACTTCATTATCCAGCGCTAGCAGATGCTAACCGCCATTTCCGCTTCACAGATAAAGCCTTTTCACATAGGAAACAGCTCAGTCCATGACTCAATACAAGACAAGCACTTCATTCGTTTTGCCCCATTATTGTGCGCATGCATTACATGGCCaagaatatgtggacacctgctcgtcgaacatctcattccaaaatcatgggaattaatatggagttggtcccccctttgcagctataacagcctccactcttctgggaaggctttacattagatgatggaacattgctgaggaGACTTGCTTCCCTTCAGCCACAAGAGAATTATTGAGGTTGGGTACAGATGTTGGGCGATTTGGCccggctcgcagtcggcgttccaattcagtccaaaggtgtttgatgtcagggctctgtgcaggcatcATGTAGAATATGCTGTAGCGTtgggatttcccttcactggaactagggggcctagcccgaaccatgaaaaacagccccagaccattattcctccaccaaactttacagttggcactatgcattcgggcaggtagcgttctcctggcgtcCGTCAGACTGCTAgctggaaacccatttcatgaagctcccaacaaacagtgattgtgctgacgttgcttccagaggcagtttggaactgagtagtgagcgttgcaaccgaggacagatgatttttacgcgctgtGCGCttggtggtcccattctgtgagcttgtgtggcctaccactttgcggatttccacaataacagcacttacagttgaccggggcagctctagcagggcagaaaaatGTCCttactaacttgttggaaaggtaacatcctatgacggtgcccgGCGATTCACTGAGCTCTCAGTAGTATGGGCCTTTCTAACGCCAATGtttatctatggagattgcatggctgtgtgctcgattttatacacttgtcagcaatgggtgttgttgaaatagccgaatcaactaatttgaaggggtgtTgttgaaatagccgaatcaactaatttgaaggggtgtccacatacttatggccatgtagtgtacattGTACTTTGACTTGTTGTATTCATCCTATTCAGTGCTTTAATTGTtggtactctactgtattaactACGTCATTATTTACTGAGGTAAAAATTAAGTATGTGTTTGGTAAAATGTAACTGTTCTCATACCCACTGTCAAAACCTGTTGCTTAGTGCTCTCCTGTTGGGCTTGGGAAACTAACAGAGATTTAGACAACCTCCTGACATTCAGAGAACGTTCAGAGAACTCCCTTTAGTACAGTAGCATGTTCACTCATCATGAGCAGTACCTTACCCACtaggcacagacatcagttcaacatctagttttgagttacatttggttgagttgtcaactaatgtgaattccaCACAAAATCTCACCAGGACATTGGATTTAGAATAAAAGTTGGGTGAAGAATccactcagttttccacattAATTCAACAtcacgtggaaacaacattgatttaacCAGTTCTTGCCAACGTGGGTACCCACTTTGCTCAACGTTGAGAATTTAAAGCACATTTAAAGGAAATAACTGCTGCTTGTATAGTTCCGTCGGAGCCACTGGCTTAAATCTATTCTCTAACTTCTATTTTCTGTTGACATGGAGACCTGAATCACACAATTCATTTGTTAACTGATCGACAAGTTAATAGGATATTTACTGTATTGCAAAAATATTTAATTGTGcttggttgtcaacgcaaccaaaaaTAGACATGAAGGAGATGTATCCTCAGATAGTGGCACGGATGAAACtatctggctttaattccagtttgtctacaaatgtaTACTTACAATTTGAATTAATAGGGCTAAATCAGATGAAACATTAAGTGCACtttaaatacagtttgatttaatTTAGTTATTGTTTAACTtacatttttggttgagatggagacatgaatccaactTTATATTTTACTAACTTGTAGAttccatttgaaatcaaccaaagcttgaatcgtgtgttgaattgaaacaatagcagTTGATGACTTTAGAAatgctatataggcctaaatatcatcattgatgatatatggtcatatttcatttgctctgttaaacctacccttgACTTTGATAACGGTGAATATATCAACAATCATTCTCACAATAGCACATTAGTAACAGTTGATGACAAATATCAAAGTTTAGCAGggcttggtaaaaaaaaaatccttaagTGCGTCAATCtaattaacaaacaaaaaaaatccatcaGTTTCTGTTTTTTTGCATCTCTATCCGCCTATGTCGACCTCCTGCCACTGCAGTAGAAAATGGCAGAGCTACGgtgctgtttgtcagaccaggatacatctaaaaaaaaaatctgtcttctTACAAAAACGTCTGAACGGTTTGGCTTACTAACGAATATTAcaactctatggaaagatgaaaCTAAACAAACACACTGGTCTGAATGTAACCCAGTACCAGTTTTATAAAATGAACGGAAggttggaggtagttttgtgccaacaataATAGGGGTTAAATGTGTGttcaaaaaacaaaaatatttcctgagctttcttatatctcctataAATAGGACAGACAcatcaaaaccttattccttatgtcTGTTTTCCCACGTATGAATGCGTTACTCAATGCGCTATAGTGGTGAAGGCCAAAATCAAGTCGGGatacctacagTTGTTTTCTTATAGTGGATATTACGTTGTTTCAAAGGTATAAATTCAACATATTTAGAAAATTGGTTATGAAAtattcctgtggttgaaattaCAACAGTTgactacttttttcaaatccaatgtattttccacgtcacaatacgttgacTTAACCAGTTTGTGCCAAGTGGGTACAGAGTCTAGTGGTTATGGTGacacatgcgtgcacacacaaaAAACGTCAGTGCATTGCAAAAAGAAAGTGTCAGAGGTGTTTCAtggatgcagagacagacagaagccCTCCCTCTCAGTGTGTAAGCTTGGCTCAGGAGCACATTGTAAAGAGAAATCATACTCATCTTACTTTCAGTCCTATTCTAGTTTCATGGTGGAACTGTTATTGTTGTTATAACTTTACACCGGTAAAAAAAACATtgtaaaataaacaaaagtaGCATAACTTTACACTGTACAGTACGGTATAGACTGGAATGTAGGCAAGTTAATTTGAATCACATACGATAACATGATTTGATAATGAGAGACGAGGATGGTAGGAGGAGTTTGAGAGTCTCTTCCAATTTTCCTCGGAGTGCTGAGCTTTACATTGAGATGGTTTGAACTCTCGGTGACCCCTCCCCTTTGAACCTTCTTCCTCAGTCTGATAGAGTCTCTGGTAAGGAGGGTTCAGAGGGTGATACCATAGTCCCATAGTCTGTCAGGGAGCTCAGTCCCTCAGTCCTATTATAGTCCCACATTTACAAGGAGAATCCCACTGAGTTACACGATGAAGAGGAACACATGAGGtacagcagagggagggagagagagacgcagcaTGGTCTCAACCTACTAGACAGCTTTGTTAGATTTGATAAAATAATGGTAATTATATAGAGTACCATAAACTAATCAAAGGAACCTTGAATGGGAAGGAATTAACCATAAAAAATATTTGGAGGATGAAAACAAACCGGTTTGGTCATAAGTGCATCGCTTAATTAAACTCAAGTGCTCCGTGACAAACGTGTCATGGTAGAGGAAACTCCAGGCCATTCTCGGCTATCCACGTCTTACGAAAAAGGTAATTTCTTACAACTGAATTACTGTATTACAATgcagtttttttttgtcaatttacTTCTCTAGCTCATAATATGGTTGGGAACTAACATGCTTTCTACCTAAACTCAGATTCATTGGAAGACACACTTCGGACGCGAGTGTCACAAATTATACACTTGTTTGCACTTACATATGCAGTGTTTAGTCATATCTATTTGGTTTATATCAAGTGTCTCTAGATTGAACCCTAGAATGTACATAATGTATCACCTCATACCAAAAGTTCACCTTAGTCTTCAATTTCCTTTAAGCCTACAGTTCACACAACATTCCTAATTTGATTGCCTAGAATTACATgaagtaaataaaaataaaatataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1214516 lncRNA downstream 17688 36448196 ~ 36449810 (-) True G1066338
TU1214506 lncRNA downstream 23017 36414086 ~ 36444481 (-) True G1066331
TU1214504 lncRNA downstream 53940 36412165 ~ 36413558 (-) True LOC110539141
TU1214489 lncRNA downstream 88315 36378788 ~ 36379183 (-) True G1066315
TU1214430 lncRNA downstream 197187 36270087 ~ 36270311 (-) True G1066257
TU1214552 lncRNA upstream 39816 36513193 ~ 36570376 (-) True LOC110537521
TU1214627 lncRNA upstream 143166 36616543 ~ 36741034 (-) True G1066438
TU1214677 lncRNA upstream 234071 36707448 ~ 36708880 (-) False LOC110537525
TU1214682 lncRNA upstream 234071 36707448 ~ 36708693 (-) False LOC110537525
TU1214674 lncRNA upstream 234149 36707526 ~ 36708880 (-) False LOC110537525
XR_002475871.2 mRNA downstream 53934 36412252 ~ 36413564 (-) False LOC110539141
XM_021623622.2 mRNA downstream 66956 36397598 ~ 36400542 (-) True LOC110537518
XM_036937475.1 mRNA downstream 109475 36311115 ~ 36358023 (-) True LOC110537517
XM_021623621.2 mRNA downstream 109476 36311115 ~ 36358022 (-) False LOC110537517
XM_021623620.2 mRNA downstream 156624 36292707 ~ 36310874 (-) True LOC110537516
XM_036937476.1 mRNA upstream 39816 36513193 ~ 36620615 (-) False LOC110537521
XM_036937477.1 mRNA upstream 39816 36513193 ~ 36620615 (-) False LOC110537521
XM_036937478.1 mRNA upstream 39816 36513193 ~ 36620615 (-) False LOC110537521
XM_036937479.1 mRNA upstream 39816 36513193 ~ 36620615 (-) False LOC110537521
XM_021623627.2 mRNA upstream 156382 36629759 ~ 36641133 (-) True LOC110537522
TU1214327 other downstream 368024 36099030 ~ 36099474 (-) True G1066163
TU1214216 other downstream 527927 35939243 ~ 35939571 (-) True G1066054
TU1214124 other downstream 657104 35792355 ~ 35810394 (-) True G1065969
TU1212981 other downstream 982994 35476837 ~ 35484504 (-) True G1064912
TU1212669 other downstream 1206964 35219535 ~ 35260534 (-) True LOC110537509
TU1215682 other upstream 436054 36909431 ~ 36912757 (-) True G1067390
TU1215723 other upstream 463942 36937319 ~ 36937979 (-) True G1067426
TU1215774 other upstream 546624 37020001 ~ 37030684 (-) True LOC110537534
TU1216092 other upstream 1032503 37505880 ~ 37507144 (-) True LOC110537540
TU1216102 other upstream 1129788 37603165 ~ 37607015 (-) False LOC110537546

Expression Profile