RNA id: TCONS_00042256


Basic Information

Item Value
RNA id TCONS_00042256
length 1229
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_020702
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1739730 ~ 1744114 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGGAAGCAACGGCGAATCAACGCACCGAACAACAAAatgaaagaaactcaaccaccggtgacctactcacatctgcagcttctccacgatggacgtccagcgttctccagtgcctagactgcagctctgcacaaaaagttttgccagagaagaaatggtcgtgcccaacagagcctggtttctttctaggttttgtttttttcttcactttcatcgattggtgaagtttgtcgccactggcttacatggtttgagacttgtggatgtcctgcagattttgatGTTGACAGAATGCAAACAAAGACCATTCTGCACGCAACTCTCTAAACAATCGATTAACTGTCGAAAactcatcgatggatttgcttttcagtgtttggactatcAGCGGTGAAAATTaagccacactgaactgagctaaactgagcttcaactctgaaaactggactgacactgtttcaatctactagacttgctttgacacaatctacattgtaaaagtgctatagaaataaagattaatagaACTGAATAAAAGTTTTGAACCtcctgagagtgagtaaatagtgtacattttcatttttggttgaactatcccatTAGGATACACACTTTTTACAGTGAAATCTGATGTAAAACTCTTTACTAGCAAAGGAAATCAATGTAGCTTTACATGAAATTGAATATGATCCTTCAGCCACCAGAAATGTTCAGCATAATTGATCGAACGTGtttgttttctctccagtgtggctcttcatgtgtttgtaaatgtataataTTCTAGTGAAGCTCTTGCCACACTCAGTACATGTGTAGGGTTTCTCTGCAGTGTGGATCATCTCATGTATTTTCAGATCACCCGACCGAGCGAATCTCttgttgcagtgtgaacacacgtacggtttctctccggtgtgggtCCTCATGTGACGCTTTAACTCCGCAGctctaataaaagtcttctcacacatgaagcacacaaactctctcacgCCAGTGTGGACGTTCTGATGTGATTTTAAGTGTGTCTGCcgtgtaaaactctttccacactcagagcAAGAATAAGGCTTCTCCTTGGTATGAACTCTAAGATGGATGGTCAGCTCTGAAGGCCTGAAAAATGTTTTCCCGCATTGATCAcacttgtgtgttttctctccagtgtggatcagcatGTGTCGAAGAAGGTTTGACGATTGTGTGAAACTCGTGCCACACTGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042252 lncRNA downstream 131485 1605665 ~ 1608245 (-) True XLOC_020699
TCONS_00042249 lncRNA downstream 150075 1481483 ~ 1589655 (-) True XLOC_020697
TCONS_00042250 lncRNA downstream 214174 1497890 ~ 1525556 (-) False XLOC_020698
TCONS_00042251 lncRNA downstream 214174 1523732 ~ 1525556 (-) True XLOC_020698
TCONS_00042248 lncRNA downstream 286699 1449858 ~ 1453031 (-) True XLOC_020696
TCONS_00042257 lncRNA upstream 12554 1756668 ~ 1759855 (-) True XLOC_020703
TCONS_00042258 lncRNA upstream 19800 1763914 ~ 1765994 (-) True XLOC_020704
TCONS_00042259 lncRNA upstream 55085 1799199 ~ 1818216 (-) True XLOC_020705
TCONS_00042260 lncRNA upstream 180191 1924305 ~ 1935675 (-) False XLOC_020706
TCONS_00042261 lncRNA upstream 180191 1924305 ~ 1960705 (-) True XLOC_020706
TCONS_00040900 mRNA downstream 379874 1320991 ~ 1359856 (-) True XLOC_020693
TCONS_00040898 mRNA downstream 494504 1205787 ~ 1245226 (-) True XLOC_020688
TCONS_00040897 mRNA downstream 502727 1205787 ~ 1237003 (-) False XLOC_020688
TCONS_00040896 mRNA downstream 571439 1164656 ~ 1168291 (-) True XLOC_020686
TCONS_00040894 mRNA downstream 659957 1073413 ~ 1079773 (-) True XLOC_020685
TCONS_00040902 mRNA upstream 1130724 2874838 ~ 2886937 (-) True XLOC_020737
TCONS_00040903 mRNA upstream 1151397 2895511 ~ 2922053 (-) False XLOC_020739
TCONS_00040904 mRNA upstream 1153159 2897273 ~ 2929156 (-) False XLOC_020739
TCONS_00040905 mRNA upstream 1167252 2911366 ~ 2929127 (-) True XLOC_020739
TCONS_00040906 mRNA upstream 1187226 2931340 ~ 2937503 (-) False XLOC_020740
TCONS_00040899 other downstream 509708 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 579981 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 922323 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 1392316 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040924 other upstream 1851154 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 2567689 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 3075296 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 3083842 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 3154472 4898586 ~ 4899116 (-) True XLOC_020764

Expression Profile

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