RNA id: TU1215682


Basic Information

Item Value
RNA id TU1215682
length 3327
RNA type TUCP
GC content 0.44
exon number 1
gene id G1067390
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 36909431 ~ 36912757 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCAACGGTTACATTTTGAACAGATTAATTACACATGTCTGAATAAGGCAGAGAGGGAAGGGAGTCAGAAGCTAAGAAGCATGACAGCAAAAAAAGAAGCTTTGTTACATGTGTATGAATGTATATAAACAGTGATACAGCCTCCCAACTCTTTGTGCATTATCAGACAACCCTTCAAAGAGGACGGAGGGGTAACTGACCATGTAGAAAAAGATATACAGCTCATTATCGTATCACAAGTTCCAAAGTACTGTGGTGATAGTTGGGAGTTTTGTCTCCCTACTCTACCGATTTCTGACTCATGTGATGTGACCAGAAATGACCCTCGACCTCCTCTTACTGTGCTATCGTAGCCTACTATTATCTGCTTGATGACTGTGATATTGTTACAGCAATATAAAGTGTTATTTACCACATCTGTTGACAGCAACTCAACCAACATGTATTAAAGTTGAAGTGATCTTGTTCGTTGGACAGGTTGATgacagagctgagaccagagaacgCATATCTTCTGGCTCTAGACTTATTTGAAGGTCATGTTTTTTTCATTCATCATATTTAGCTTTTATATACAGGCCCAAATATTCTTCCAACAGATGTATTAATCAGTTAGGATCTTATATCTGTGTTGTTAAAATTCGTATGTGTTTTAGTGCTATTAAAATACAATTATGAGTTACTGTATAACTCCTGGGTGAAGATGTTCAAGTGACAATGGTGCCTGTATCTCTATATTGGAGCAACAGCAGTGGGCACCATGGCGACCTTCACAGTACAGTATATGGATAAGAAGGGACCGAACTGTTTCATACATTTTTCAAATCATAAAAAAAAACTGGTTGGATTTCTATTCAAATGCAAGAAATTGCACATATTTGCATGATGAATTAAAACTAAGCCAGTTAAGTTTTAATACATAAAGGCTGCTAGAGATACTTCGACACGACTAAAGTTACAAGATTGGGCAATATTAATCACTACAAATATTGCTTATTGTAAAGGCATGATGCAAGCTTCAGAAATGGAAACACAACATCCCCATAACAGGGAAATGGCAAATCCACTTCATTCTGTTCTATGGCCCTCCAGAACCAACTTCACCTCCCTTCTTTCATAGAAACCCCAAAACTGATTGACTCAATTGAAAAGGCATAAGTAGAGATGAAAAAACGGACACAACaaagacagcgagacagagacaagCTTCAAGAGGGACAAAACACATAGAGACAAACATACTGTAGTGAAAGCATTTTAGCCGGGGAACAGAACAGATCTGTCATTTTTAGTGCTAAACCAAAGGCAGGAGTATAGCCTTTCAAATGGAAAGTATGGATGATATAAAGAGACACAGCAATGCCACTACTATAAATCAGTCCCGTCTTAATTTGTGCGTTATAAAGGTCTACATAAATATGTCATAGAGAGTATAATTCACACACAAGAGCTAGCTATCTTAGATGTAAGGTTACGTCAAGCAGCGTACTCAACAGCTGAGTACAATGGCACTTTCACATTGAAGGTTCAGTTCAGTTTCTAGACAAAGCTCCACCATGTGAGGAAGCTTGTGTTCCAAGACCTACAGTACAGCCAACTGCACTCAAACAGATATCAGTACAGAAGAGCTAATGGCGATGCAATGCCAGGGTTAGGGGGGAACGCAAAGTGCTGTCATGGATTAGGATGTGGGCATGTTCAATATCAAGCCATCTCCTTGATGTACTACCCACATGTACTAACTAAGCCATTTGATTGCATGTGTATTGTCTAGGTGTCTGTATCATTTGGTGTGGTAAGGCAGGGGgcagcagagacagtagattAATGATCATGAAACAGATACGGATATAGACTGTGCACTGCACAACAATGACAAGGATGAAAGGACTGGTTGATAGTGTGACTAATCATTTCCATGGCTGATGTACTCATTTCACAGCATTACTCATTTGTGCCATGCAGGAGAGTTGCTTCAGAGAGAAACAGTTTGACAGACTCATCTAACACACTATAGGCTACTTGCTCATGAGGGGATATCCGTGCCTTTGACAGCACTGTCCCGCTTCTCTTCAGTCTCCCCTTTGAAAAAGATGTCCCTTCAGATAAGTTAGTTGCTGTGTCCTCAAAAAGGAGGTGCAGAAGTGTAAACATGTTCTAAAACAAAAACCAGCAGCTTTGACAACGAACCATGAAGAGATCCAAATGGGCCTAGCTATATGAATACAGTTCCCATCATACTCCATTGTGCCCTTAAgcacagatccaggatcagtgTACccaccccaaaccctaaccttgacTATTAGGGGGAAAACGCTAGACGTGACCACAAATCAGTGTCCAGCAGCAACTCCATCCTACTTCGTTTCGACACACCAGCCCAGACTCCATTGTAACATCCTGCTTTTTCTCGGGGGTCTGACTGAACAAGGCCGTGTGTGAATTCACAGATCTATAAATCCTCTGGACAAGAACAGATCCTTATATACAAAGATGAGTGAATCTACATGATGCTGAGCTCTGGTCCACCCTCAAGAACAAGCAAGTAGCCCTTCTCCCCACATGGTAGACCTTCAGGACAATCACATGCTCACTGGACAATAAGAGCAGTGATTGACGGGGCTATTCTGTGGTTTGGCTAATCAGTGTCCATGTCCCCTCCACCCTGTATGAACTGTGTGGAATGATAAGCCACCATGCAGTTGTTGAAAAATTATGTCTTtactcttcttcctcttcctccacttgTTCTTCTACTTCATCTTTCAACTCAAGACCCTCCATCTCGCCATCCTccaactctccctccatcccctctccatcaCCCAAAGGATCCTCAATTTCTTCTTTCTCATCTTCGTAGGAAGAGATGGGTGAGTACTGGGGAAGGAAAAGGTGAGAGCTATCGGGGGCCTCAGAGCTGGCTAGAGGTGTGCTGATGGGGCCAGAGAAGGGGCTAGAGATGGGGCCAGAGATGGGGCCAGAGATGGGGCCAGAGATGGGGCCAGAgctggggagaggggggaaagactCAGACTCAGGACAAGGGCAAGGCTCGGGGTCccctgtagtagtgactgtagcagcagcaccagGGATTACTACGCCAGCCCCCAGGCCCGGTGAGAGAGCACAGATGTCGGGTAGGTGCTCCCTGATCTCCCCTGGCTCCAGGGGGTCTGGTCCACAGGGGTCGTGTTCGCTGCAGGACAGCCGTCCGTCCAGCTTGGAGATGAAGAGCATGCCGTCGCGGTGCAGTGTGCAGTAAGAGCTGGGACACATTTCACAAAAGGAAGCTGCCTCCTTACCACACAGGTCACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1215713 lncRNA downstream 638 36908462 ~ 36908793 (-) True G1067418
TU1215712 lncRNA downstream 2294 36906704 ~ 36907137 (-) True G1067417
TU1215692 lncRNA downstream 26831 36882325 ~ 36882600 (-) True G1067400
TU1214795 lncRNA downstream 48869 36860283 ~ 36860562 (-) True G1066593
TU1214790 lncRNA downstream 54728 36854450 ~ 36854703 (-) True G1066588
TU1215679 lncRNA upstream 9610 36922367 ~ 36925320 (-) True G1067388
TU1215722 lncRNA upstream 24562 36937319 ~ 36937979 (-) False G1067426
TU1215727 lncRNA upstream 26973 36939730 ~ 36940724 (-) True G1067429
TU1215728 lncRNA upstream 29935 36942692 ~ 36943176 (-) True G1067430
TU1215730 lncRNA upstream 36766 36949523 ~ 36950357 (-) True G1067432
XM_021623634.2 mRNA downstream 119516 36770248 ~ 36789915 (-) True fgfr4
XR_002475644.2 mRNA downstream 200462 36707519 ~ 36708969 (-) False LOC110537525
XR_002475643.2 mRNA downstream 208857 36671446 ~ 36700574 (-) True LOC110537524
XM_021623630.2 mRNA downstream 208860 36670504 ~ 36700571 (-) False LOC110537524
XM_021623629.2 mRNA downstream 208865 36670504 ~ 36700566 (-) False LOC110537524
XM_036936704.1 mRNA upstream 2054 36914811 ~ 36921174 (-) False rab24
XM_036936706.1 mRNA upstream 2054 36914811 ~ 36921183 (-) False rab24
NM_001124373.2 mRNA upstream 5068 36917825 ~ 36920035 (-) True rab24
trnal-caa-105 mRNA upstream 23463 36936220 ~ 36936330 (-) True trnal-caa-105
XM_021623643.2 mRNA upstream 107230 37019987 ~ 37039924 (-) False LOC110537534
TU1214327 other downstream 809957 36099030 ~ 36099474 (-) True G1066163
TU1214216 other downstream 969860 35939243 ~ 35939571 (-) True G1066054
TU1214124 other downstream 1099037 35792355 ~ 35810394 (-) True G1065969
TU1212981 other downstream 1424927 35476837 ~ 35484504 (-) True G1064912
TU1212669 other downstream 1648897 35219535 ~ 35260534 (-) True LOC110537509
TU1215723 other upstream 24562 36937319 ~ 36937979 (-) True G1067426
TU1215774 other upstream 107244 37020001 ~ 37030684 (-) True LOC110537534
TU1216092 other upstream 593123 37505880 ~ 37507144 (-) True LOC110537540
TU1216102 other upstream 690408 37603165 ~ 37607015 (-) False LOC110537546
TU1216103 other upstream 690408 37603165 ~ 37607015 (-) False LOC110537546

Expression Profile