RNA id: TU1215723



Basic Information


Item Value
RNA id TU1215723
length 413
RNA type TUCP
GC content 0.47
exon number 2
gene id G1067426
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 36937319 ~ 36937979 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGTCAACGTTTTTAGTTTAAATTTAATGTATATATAGGTAATGCCAGCACGGTAACAAGCTGAAAATGTGGGTATCCATCTGTACAACCAGAATGTTTATAGGGATATCTGGGTTAAGGGTTGTGTGGTTGACTGTGgtctatctccacagaggacaaGGGAGCAGCCTCAGTCCATTATTCTTCTACCTCCCTCCATGGTTTAGGCTGGACCTTGCCGACTGGAGACAGATTCCATGTGATGCCGGTTTGTGTCAGTACAAatccccagacagacacacaaaacgCGAATCCTCCGATCATCAGGCCGGTGCCATACTTGGCATGGAATTCGGGGGAGTGCGTCGAACTGAGCCTCACTTGACGGGCACCTTGTCCTGCTTTGAAAACAAAATATAGCTGCATTGTTTGCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1215679 lncRNA downstream 11999 36922367 ~ 36925320 (-) True G1067388
TU1215713 lncRNA downstream 28526 36908462 ~ 36908793 (-) True G1067418
TU1215712 lncRNA downstream 30182 36906704 ~ 36907137 (-) True G1067417
TU1215692 lncRNA downstream 54719 36882325 ~ 36882600 (-) True G1067400
TU1214795 lncRNA downstream 76757 36860283 ~ 36860562 (-) True G1066593
TU1215727 lncRNA upstream 1751 36939730 ~ 36940724 (-) True G1067429
TU1215728 lncRNA upstream 4713 36942692 ~ 36943176 (-) True G1067430
TU1215730 lncRNA upstream 11544 36949523 ~ 36950357 (-) True G1067432
TU1215725 lncRNA upstream 25593 36963572 ~ 36965183 (-) True G1067427
TU1215733 lncRNA upstream 28260 36966239 ~ 36966572 (-) True G1067435
trnal-caa-105 mRNA downstream 989 36936220 ~ 36936330 (-) True trnal-caa-105
XM_036936706.1 mRNA downstream 16136 36914811 ~ 36921183 (-) False rab24
XM_036936704.1 mRNA downstream 16145 36914811 ~ 36921174 (-) False rab24
NM_001124373.2 mRNA downstream 17284 36917825 ~ 36920035 (-) True rab24
XM_021623634.2 mRNA downstream 147404 36770248 ~ 36789915 (-) True fgfr4
XM_021623643.2 mRNA upstream 82008 37019987 ~ 37039924 (-) False LOC110537534
XM_021623642.2 mRNA upstream 82008 37019987 ~ 37039930 (-) False LOC110537534
XM_021623644.2 mRNA upstream 82008 37019987 ~ 37039930 (-) False LOC110537534
XM_021623646.2 mRNA upstream 82008 37019987 ~ 37039930 (-) False LOC110537534
NM_001124678.1 mRNA upstream 193806 37131785 ~ 37138071 (-) True LOC100136717
TU1215682 other downstream 24562 36909431 ~ 36912757 (-) True G1067390
TU1214327 other downstream 837845 36099030 ~ 36099474 (-) True G1066163
TU1214216 other downstream 997748 35939243 ~ 35939571 (-) True G1066054
TU1214124 other downstream 1126925 35792355 ~ 35810394 (-) True G1065969
TU1212981 other downstream 1452815 35476837 ~ 35484504 (-) True G1064912
TU1215774 other upstream 82022 37020001 ~ 37030684 (-) True LOC110537534
TU1216092 other upstream 567901 37505880 ~ 37507144 (-) True LOC110537540
TU1216102 other upstream 665186 37603165 ~ 37607015 (-) False LOC110537546
TU1216103 other upstream 665186 37603165 ~ 37607015 (-) False LOC110537546
TU1216105 other upstream 676189 37614168 ~ 37667254 (-) True LOC110537546

Expression Profile