RNA id: TCONS_00042259


Basic Information

Item Value
RNA id TCONS_00042259
length 582
lncRNA type read_through
GC content 0.44
exon number 2
gene id XLOC_020705
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1799199 ~ 1818216 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTCAcgccagtgtggatcttctgatgtcttctcacactcaaagcacacaaACCCTCTCACGGCAGTGTGGATCTGCTGATGTCTTCTCAAACTTGACTGCTGTGTAAAGCTGCTCCCACACTCAGAACAGGAataaggcttctcctttgtatgaACTCTGAGATGTTTCTTCAGCACTGCAGgcctcaaaaatgttttgccgCAGTGACCACatctgtgtgttttctctccagtgtggattatcatgtgctcattaaggtgtgatgagcatttgaaactcttcccacagtgagtacatgtgtacggtttctctccagtgtgagtcctctcatgtACTGTCAGATGTCCTGAATGGCTGAATGatttgtcgcagtgtgaacacttgtgaggcttctctccagtgtggatcctcatgtgttgatgaaGGTGTGAGGGTTGtacgaaactctttccacactgagtgcagttGAAACGTTTTACAGCTGTCGTTTTAACTGAAACACTATGTTCAATCTTTGAGTCACTTTCAGTTTCacttttgacatgatgtttctcctcatctttactcagttcttcactct

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042258 lncRNA downstream 33205 1763914 ~ 1765994 (-) True XLOC_020704
TCONS_00042257 lncRNA downstream 39344 1756668 ~ 1759855 (-) True XLOC_020703
TCONS_00042254 lncRNA downstream 49459 1703690 ~ 1749740 (-) True XLOC_020701
TCONS_00042256 lncRNA downstream 55085 1739730 ~ 1744114 (-) True XLOC_020702
TCONS_00042255 lncRNA downstream 55141 1739730 ~ 1744058 (-) False XLOC_020702
TCONS_00042260 lncRNA upstream 106089 1924305 ~ 1935675 (-) False XLOC_020706
TCONS_00042261 lncRNA upstream 106089 1924305 ~ 1960705 (-) True XLOC_020706
TCONS_00042262 lncRNA upstream 126717 1944933 ~ 2002942 (-) True XLOC_020707
TCONS_00042263 lncRNA upstream 141822 1960038 ~ 2021473 (-) True XLOC_020708
TCONS_00042264 lncRNA upstream 176512 1994728 ~ 2014333 (-) True XLOC_020709
TCONS_00040900 mRNA downstream 439343 1320991 ~ 1359856 (-) True XLOC_020693
TCONS_00040898 mRNA downstream 553973 1205787 ~ 1245226 (-) True XLOC_020688
TCONS_00040897 mRNA downstream 562196 1205787 ~ 1237003 (-) False XLOC_020688
TCONS_00040896 mRNA downstream 630908 1164656 ~ 1168291 (-) True XLOC_020686
TCONS_00040894 mRNA downstream 719426 1073413 ~ 1079773 (-) True XLOC_020685
TCONS_00040902 mRNA upstream 1056622 2874838 ~ 2886937 (-) True XLOC_020737
TCONS_00040903 mRNA upstream 1077295 2895511 ~ 2922053 (-) False XLOC_020739
TCONS_00040904 mRNA upstream 1079057 2897273 ~ 2929156 (-) False XLOC_020739
TCONS_00040905 mRNA upstream 1093150 2911366 ~ 2929127 (-) True XLOC_020739
TCONS_00040906 mRNA upstream 1113124 2931340 ~ 2937503 (-) False XLOC_020740
TCONS_00040899 other downstream 569177 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 639450 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 981792 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 1451785 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040924 other upstream 1777052 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 2493587 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 3001194 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 3009740 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 3080370 4898586 ~ 4899116 (-) True XLOC_020764

Expression Profile

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