RNA id: TCONS_00042261


Basic Information

Item Value
RNA id TCONS_00042261
length 1033
lncRNA type read_through
GC content 0.44
exon number 2
gene id XLOC_020706
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1924305 ~ 1960705 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagtgtggctcctctcatgtgttttcaggtgtCCTGAACGTCTGAATgttttgtcgcagtgtgaacacttgaaatCTCCAGTGTGACTCCTCTGGTGTCGTCTCAAGTCCGCAGCTTTaaaaaaactcttcccacactcagagCACACaaactctttcacaccagtgtggatcttctgatggtattttaaatgtgtcggatgtctaaaactcttcccacactcagagCATGAATACGGCCTCTCGTTTGAATGAACGCTAAGATGTCTCTTCAGCTCTGAAgccctcaaaaatgttttgctgcactgATCACATCTGTGAGTTTTCACTCCAGTGTGAACCagcatgtgttcattaaggtgtgacATTTGTGTGAAACCTTTCCCGCACTGAGTACATGttaatggtttttctccagtgtgaatcatctggTGCATTTTCAAGGCTCTAGCTGTAATAACAGTCTTTCCGCACTCAGAGCAGGAATAAGGCCTCTCACTTGTATGAACTCTAAGATGGTTCTTCAGCTCTGAAgccctcaaaaatgttttgctgcactgCTCACATtggtgtgttttctctccagtgtggatcagcatGTGTGTTTTCAGGTTTCCTAAATTATTGAATCtcatgtcgcagtgtgaacacttgtaaggtctctctccagtgtggattctcatgtgtgtTTTCAGGTTTCCTGGATGAATAAATATCCTGTGGCAGTGTGAACATCTGTGAGGTtcctctccagtgtggatcatcatgtgtgtTTTCAGCTTTACTAAATAATCAAATCTCATGTCGCattgtgaacacttgtaaggtttctctccagtgtggatcatcatgtgacgCTCGAGATAGCATTggtggctgaaactctttccacactgggtGCAGGTCAAACAGTTCACAGCTGCTCTTTCCACTGAAAAACTATCTTCAGTGTTTGTGTGAGTATCTTCTTCACtcttgacatgatgtttctcctcgtcttcactcagttcttcactctcctccttcacaATCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042259 lncRNA downstream 106089 1799199 ~ 1818216 (-) True XLOC_020705
TCONS_00042258 lncRNA downstream 158311 1763914 ~ 1765994 (-) True XLOC_020704
TCONS_00042257 lncRNA downstream 164450 1756668 ~ 1759855 (-) True XLOC_020703
TCONS_00042256 lncRNA downstream 180191 1739730 ~ 1744114 (-) True XLOC_020702
TCONS_00042255 lncRNA downstream 180247 1739730 ~ 1744058 (-) False XLOC_020702
TCONS_00042264 lncRNA upstream 34023 1994728 ~ 2014333 (-) True XLOC_020709
TCONS_00042265 lncRNA upstream 88907 2049612 ~ 2302229 (-) True XLOC_020710
TCONS_00042266 lncRNA upstream 100980 2061685 ~ 2223987 (-) True XLOC_020711
TCONS_00042267 lncRNA upstream 117920 2078625 ~ 2087205 (-) False XLOC_020712
TCONS_00040901 lncRNA upstream 122988 2083693 ~ 2087192 (-) False XLOC_020712
TCONS_00040900 mRNA downstream 564449 1320991 ~ 1359856 (-) True XLOC_020693
TCONS_00040898 mRNA downstream 679079 1205787 ~ 1245226 (-) True XLOC_020688
TCONS_00040897 mRNA downstream 687302 1205787 ~ 1237003 (-) False XLOC_020688
TCONS_00040896 mRNA downstream 756014 1164656 ~ 1168291 (-) True XLOC_020686
TCONS_00040894 mRNA downstream 844532 1073413 ~ 1079773 (-) True XLOC_020685
TCONS_00040902 mRNA upstream 914133 2874838 ~ 2886937 (-) True XLOC_020737
TCONS_00040903 mRNA upstream 934806 2895511 ~ 2922053 (-) False XLOC_020739
TCONS_00040904 mRNA upstream 936568 2897273 ~ 2929156 (-) False XLOC_020739
TCONS_00040905 mRNA upstream 950661 2911366 ~ 2929127 (-) True XLOC_020739
TCONS_00040906 mRNA upstream 970635 2931340 ~ 2937503 (-) False XLOC_020740
TCONS_00040899 other downstream 694283 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 764556 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 1106898 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 1576891 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040924 other upstream 1634563 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 2351098 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 2858705 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 2867251 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 2937881 4898586 ~ 4899116 (-) True XLOC_020764