RNA id: TCONS_00003997



Basic Information


Item Value
RNA id TCONS_00003997
length 1599
RNA type mRNA
GC content 0.38
exon number 6
gene id XLOC_002062
representative False

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20364009 ~ 20372269 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TTAGAACAGCAATGCTGTCTATGCTTGCAAAAGGCTAacgaaatgtacatttaaaaaaggatcaCTCATTTGATTAATAATAGTCCTACCCAAGCTACTAAACTAAAAGTTTAATTGCAATCTAGAACAAATTTACCAATGCGATGAACAAATGGCTACAGTTTGGAATTGACCAAGCATCggaactaataaataaatgtaaaagttcCTACCGGACTGTGTTTTGAGGAGGACGAGGAGTCTGAATAACAGGAAGAGGAGAAGCAGCCACTATGGCGGAGACGCACAGCTTGCAGGACCTGCGGCAAGCAGCCGTCGCCTCCAAGGTTTTCGTTCAGAGAGATTACACCAGTGGCACCATCTGCAAGTTTCAGACCAAGTTCCCAGCCGAACTGGAGAGCAGGattgACAAGGTGCAGTTTGAGGAAACCATACAGACCCTGAATAATCTCTATGCAGAAGCAGAGAAGCTGGGCGGCAGGTCGTACCTGGAGGGCTGTTTGGCCTGTCTCACTGCGTACACAATCTTCCTCTGCATGGAAACACACTATGAGAAAGTGCTGAAAAAGATTGCTAAGTTCATCCAGGAGCAAAATGAGAAGATCTACGCTCCTCTTGGGCTTCTTTTGACCGACCCCATTGAGAGGGGGCTCAGGGTCGTGGAGATCACTATATTTGAGGATAGAAGTATTGGTTCAAGATAAAACACAccaaagGATCATGTTTGGAATGTGATTGCTGGCCTGCTGGACTCAGAACCTGCTTCTCCGTCTCATGATATCACAACCCTACTGCTTTAAATGTAGATagcatcatttttttattattatttagttttggacagagggagagagtgaaatataaaatatatcttaaagaAACTCTCCAAATCAGCTTTCCCTCAGTTAGCAGCTTTCCGATGTCTTACTTAAACCGAGTTCTTTTTAAATCTATGTTGTGCCATGTAATTTTATATCGCATTGTTTGATTTCTTTACAGAGCGTTTCCCTTCTCTCGTTTTCTGTATATACTTGTCTTGAATGGGAAGTATAGATTAAGTGCACAATGTTCTGCCACAATACAGTTGCATATTATTAGGATCTTTTGTGACTGCGTTTTCGTATTAACAATATGTTTTCAAGAAATTCGATCAAATATGTGCTTGTAGAAATGTCTATAAATACATGAAGAAGCTTTGAATGTGTACGAGGAAATTTGAGATGGATAATTAGTTTgttgtaattaattaatgcaaGTACTAAGTTTAGCTGCTTTACTAAGCTCCATTCCTTTTCCCTCTTTGAAAAACAGCTTGTGTTTTCTATTTTAACACTACATTTGACTCTATTTACCAATGAACTACTGTACTTTTATCGGGGTCTGCAATATAATCCTTATTACAAACAAACGCCATCGAATCCTTAAAAGGCATGGTTTGCATTTAATATTGCATCTCCAGCTTGTATTTCAGACTCTTGTCAGTTCGACCTGTTTCTTGCGTAAATCTTTTTATCAGTGTTGTATCATAATGTCTTTTTTGAAAATCTTTTGACACTTATTTAAATGTATCGTACAATAAATAGCGTTTTCTTGAACAAA

Function


GO:

id name namespace
GO:0006612 protein targeting to membrane biological_process
GO:0043001 Golgi to plasma membrane protein transport biological_process
GO:0018230 peptidyl-L-cysteine S-palmitoylation biological_process
GO:0005795 Golgi stack cellular_component
GO:0002178 palmitoyltransferase complex cellular_component
GO:0019706 protein-cysteine S-palmitoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-142 Predicted to be involved in Golgi to plasma membrane protein transport; peptidyl-L-cysteine S-palmitoylation; and protein targeting to membrane. Predicted to be located in membrane. Predicted to be part of palmitoyltransferase complex. Predicted to be active in Golgi stack. Orthologous to human GOLGA7 (golgin A7).

Ensembl:

ensembl_id ENSDART00000080395

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00005869 lncRNA upstream 224106 20108557 ~ 20140049 (+) False XLOC_002059
TCONS_00003992 lncRNA upstream 229275 20132370 ~ 20134880 (+) True XLOC_002059
TCONS_00005865 lncRNA upstream 638561 19602396 ~ 19725594 (+) False XLOC_002058
TCONS_00005870 lncRNA downstream 4946 20377088 ~ 20381313 (+) True XLOC_002063
TCONS_00005871 lncRNA downstream 76325 20448467 ~ 20452630 (+) True XLOC_002065
TCONS_00005704 lncRNA downstream 129634 20501776 ~ 20502178 (+) True XLOC_002066
TCONS_00005872 lncRNA downstream 271193 20643335 ~ 20644918 (+) False XLOC_002069
TCONS_00005873 lncRNA downstream 271718 20643860 ~ 20645459 (+) True XLOC_002069
TCONS_00003995 mRNA upstream 106980 20256454 ~ 20257175 (+) True XLOC_002061
TCONS_00003993 mRNA upstream 129772 20180163 ~ 20234383 (+) False XLOC_002060
TCONS_00003991 mRNA upstream 217611 20128267 ~ 20146544 (+) False XLOC_002059
TCONS_00003989 mRNA upstream 222812 20108557 ~ 20141343 (+) False XLOC_002059
TCONS_00004003 mRNA downstream 19941 20392083 ~ 20401485 (+) False XLOC_002064
TCONS_00004004 mRNA downstream 20514 20392656 ~ 20402161 (+) True XLOC_002064
TCONS_00004005 mRNA downstream 217827 20589969 ~ 20609075 (+) False XLOC_002067
TCONS_00004006 mRNA downstream 218048 20590190 ~ 20605986 (+) False XLOC_002067
TCONS_00004007 mRNA downstream 236534 20608676 ~ 20626795 (+) True XLOC_002067
TCONS_00003994 other upstream 130110 20221366 ~ 20234045 (+) True XLOC_002060
TCONS_00003965 other upstream 1429614 18911175 ~ 18934541 (+) True XLOC_002047
TCONS_00003963 other upstream 1467551 18892047 ~ 18896604 (+) True XLOC_002046
TCONS_00003957 other upstream 2113087 18240798 ~ 18251068 (+) True XLOC_002043
TCONS_00003954 other upstream 2473952 17890089 ~ 17890203 (+) True XLOC_002040
TCONS_00004010 other downstream 311894 20684036 ~ 20684150 (+) True XLOC_002071
TCONS_00004011 other downstream 864422 21236564 ~ 21236678 (+) True XLOC_002075
TCONS_00004013 other downstream 1025178 21397320 ~ 21399705 (+) False XLOC_002077
TCONS_00004014 other downstream 1025225 21397367 ~ 21404971 (+) False XLOC_002077
TCONS_00004015 other downstream 1027573 21399715 ~ 21402166 (+) True XLOC_002077

Expression Profile


Expression of TCONS_00003997 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.
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Expression of TCONS_00003997 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.