RNA id: TU1216191


Basic Information

Item Value
RNA id TU1216191
length 233
lncRNA type intronic
GC content 0.34
exon number 1
gene id G1067832
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 37609358 ~ 37609590 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATTAAGCCATTCAAGAGTTCCTATCCCTGCAAATTAAAAGGCTGTACAATTAAAATTCGACATAATGGCACAGTATTTCATAAACTTTACTGTGGGaatgttgatatgcttcagtttgctgccatatgactggtttcacatttgtctccaggtgaaataaaacaagtgtcatttatatttacaattcccttctccaaacggattactcatttacctagctcttatcaatag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1216187 lncRNA downstream 12349 37596496 ~ 37597009 (-) True G1067828
TU1216179 lncRNA downstream 20028 37586289 ~ 37589330 (-) True G1067821
TU1216178 lncRNA downstream 20220 37586289 ~ 37589138 (-) False G1067821
TU1216174 lncRNA downstream 20402 37586289 ~ 37588956 (-) False G1067821
TU1216238 lncRNA upstream 103318 37712908 ~ 37713802 (-) True ska2
TU1216240 lncRNA upstream 104353 37713943 ~ 37714433 (-) True G1067876
TU1216234 lncRNA upstream 149364 37758954 ~ 37760121 (-) False G1067872
TU1216235 lncRNA upstream 149364 37758954 ~ 37760121 (-) True G1067872
TU1216311 lncRNA upstream 164722 37774312 ~ 37776383 (-) True G1067924
XR_005034960.1 mRNA downstream 102120 37505206 ~ 37507238 (-) False LOC110537540
XM_021623651.2 mRNA downstream 160408 37445886 ~ 37448950 (-) True LOC110537538
NM_001124678.1 mRNA downstream 471287 37131785 ~ 37138071 (-) True LOC100136717
XM_021623644.2 mRNA downstream 569428 37019987 ~ 37039930 (-) False LOC110537534
LOC110539142 mRNA upstream 65071 37674661 ~ 37678290 (-) False LOC110539142
XR_005034968.1 mRNA upstream 103837 37713427 ~ 37740454 (-) False ska2
XM_021623670.2 mRNA upstream 105273 37714863 ~ 37740454 (-) False ska2
XM_036939654.1 mRNA upstream 168397 37777987 ~ 37790177 (-) True LOC110539143
XM_021623672.2 mRNA upstream 193006 37802596 ~ 37867600 (-) False LOC110537549
TU1216102 other downstream 2343 37603165 ~ 37607015 (-) False LOC110537546
TU1216103 other downstream 2343 37603165 ~ 37607015 (-) False LOC110537546
TU1216092 other downstream 102214 37505880 ~ 37507144 (-) True LOC110537540
TU1215774 other downstream 578674 37020001 ~ 37030684 (-) True LOC110537534
TU1215723 other downstream 671379 36937319 ~ 36937979 (-) True G1067426
TU1216105 other upstream 4578 37614168 ~ 37667254 (-) True LOC110537546
TU1216260 other upstream 62592 37672182 ~ 37706371 (-) True LOC110539142
TU1217947 other upstream 1431930 39041520 ~ 39072472 (-) True LOC110537579
TU1217986 other upstream 1498710 39108300 ~ 39108962 (-) True G1069456
TU1218083 other upstream 1726514 39336104 ~ 39337974 (-) True fkbp6

Expression Profile