RNA id: TU1216311


Basic Information

Item Value
RNA id TU1216311
length 2022
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1067924
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 37774312 ~ 37776383 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactgtacttgatCAGATGGAGAGTACTACCCTATCCATCTTTGTAAAGCGTCTTTAAACTTTTCTTGACTTGGAAGCAGTTAAACCAACCAAAACCCGTGGCTGTACAATTTTGAACTCATCCAAGTGCACTAAAGAAACTTTCCAGCATCTGTTGTTTGATTAACCTGGGCGTTGATCAATGTATGACATTGCTAATGTCAAAGCCCCCTTTGGAGTGGGACTGAGGCTGGCATCTGCTGATGCGGGGACAGGCAGATGGATCCTTCCATTCCTGGGGCTCAGTGCATTCTCTTTCTCTGCACTGATATGTCTTGAAGGTGCAGACTTGAGTGTAAAATCCTTAAAGGCAGCATTACGAATTCCATACCCAACCACTCAAACACTACAAGCACAAACGAAGAACCCAACTGTCATTCAATTTAAGCCAATCGTAAAGGACCCTCTCCTTCACACTTTCAGAAACCAAAACAAACAACCGTAGGGACACAGTGTCCCACACAATGTTTAATCTTCTAATAGCTTACAAAACACTGACCGTCCTTACCAGAGAACTGTCTCTTTCATTTCCTGAGGACACATCACTTTTTATAATCAGGGTTTCTAGTCCTTGGCGGAGGTTTAAACAAGCGTAGTGAACTTCAAAGAGGATGGTGATATGTTATTTGGAGTAATATCACCAAATCCAATCCAACTTTTACGCTCCAACCGCAAACACAACCTTGTACATCATAAATCTACAATTGTAGATGCACATGATAAGGGTTTTTAACACAATATAATGCGAcaaaatacttttgcaaggcactggatGTATTGTATATAAAgttgtgttatttgttttgtcaacaatctacacaacatactctaatgtcaaagtggaagaagatAAAGATAAATACAAATTTAGAACAAAAATATAGTCATTGCATAAGTATTAagcccctttgtttaggcaagcctaaattagttcaggagtaacatttggcttaacaaatcacataagaagttacatggactcactctgtgtgaaataataggggttgatgtgatttttttaatgactaacCCTTCATCTGTCCTCCATatatacaacatctgtaaggtccctcagtcaaattggtaacaataacaaatcagacattgaatatctctttaagcatggtcaagttaataattatactgtggattatgtattaaaccacccagactcAAAGACACAGttatccttctgaactgagccacaggacaggaatgaaactgctcagggatgtcaccatgaggccattggggattttaaaacagctacagagttcaatggctgtcaTGGGAGAACGCTGAGGTTGGATCAACAACAatatgacagtgaaaagaagaatTCAAGTATACAGAATAaaatactggggagtttttcaggataaaaagaaacaggatGGAGTGTGtttgcacaggcaaaatcctagacaAAAACCTGCTTCAGGGCctcacgagtggcgcagcggtctaaggcactgcattgcagtgttgtggcatcactacagcctggggttcgatcccagccgtgaccgggagtcccatagagcggcgcacaattggactagcgtcgtccgggttaggggagggtatgGCTAggagggctttacttggctcatcgtgctctagccaCTCCTTGTTGGCGTGCCGGGCagctgcaggctgacttcggtcgtcagttgaacagtgtttcctccgacacattggtgcagctggcttccggattAAGTGAGCGGGTGTTAAGTGCGGCTTGGCAGATCATGTtccggaggacgcgaaattggggagaaaaaggtagTAAAAATTACAACAACAAGAAAGTGATAAAAAAATGctacctgcttcagtctgctttacaccagacattaGGAGAGGAATTCCCCTTCCAGtgggacaataacctacaacacaggGCCACATCTACActgcagttgcttaccaagaagacagtgaatattcctgagtggccaagttccAGTTAACTTaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1216234 lncRNA downstream 14191 37758954 ~ 37760121 (-) False G1067872
TU1216235 lncRNA downstream 14191 37758954 ~ 37760121 (-) True G1067872
TU1216240 lncRNA downstream 59879 37713943 ~ 37714433 (-) True G1067876
TU1216238 lncRNA downstream 60510 37712908 ~ 37713802 (-) True ska2
TU1216191 lncRNA downstream 164722 37609358 ~ 37609590 (-) True G1067832
TU1216427 lncRNA upstream 171980 37948363 ~ 37948581 (-) True G1068021
TU1216492 lncRNA upstream 280001 38056384 ~ 38056616 (-) True G1068082
TU1216502 lncRNA upstream 296472 38072855 ~ 38073098 (-) True G1068091
TU1216503 lncRNA upstream 298473 38074856 ~ 38075215 (-) True G1068092
TU1216504 lncRNA upstream 302757 38079140 ~ 38079979 (-) True G1068093
XR_005034968.1 mRNA downstream 33858 37713427 ~ 37740454 (-) False ska2
XM_021623670.2 mRNA downstream 33858 37714863 ~ 37740454 (-) False ska2
LOC110539142 mRNA downstream 96022 37674661 ~ 37678290 (-) False LOC110539142
XM_036937505.1 mRNA downstream 106946 37603158 ~ 37667366 (-) False LOC110537546
XR_005034960.1 mRNA downstream 267074 37505206 ~ 37507238 (-) False LOC110537540
XM_036939654.1 mRNA upstream 1604 37777987 ~ 37790177 (-) True LOC110539143
XM_021623672.2 mRNA upstream 26213 37802596 ~ 37867600 (-) False LOC110537549
XM_021623673.2 mRNA upstream 26213 37802596 ~ 37867601 (-) False LOC110537549
XM_036937506.1 mRNA upstream 26213 37802596 ~ 37886734 (-) True LOC110537549
XR_005035330.1 mRNA upstream 109929 37886312 ~ 37886407 (-) True LOC118937921
TU1216260 other downstream 67941 37672182 ~ 37706371 (-) True LOC110539142
TU1216105 other downstream 107058 37614168 ~ 37667254 (-) True LOC110537546
TU1216102 other downstream 167297 37603165 ~ 37607015 (-) False LOC110537546
TU1216103 other downstream 167297 37603165 ~ 37607015 (-) False LOC110537546
TU1216092 other downstream 267168 37505880 ~ 37507144 (-) True LOC110537540
TU1217947 other upstream 1265137 39041520 ~ 39072472 (-) True LOC110537579
TU1217986 other upstream 1331917 39108300 ~ 39108962 (-) True G1069456
TU1218083 other upstream 1559721 39336104 ~ 39337974 (-) True fkbp6
TU1220392 other upstream 3262483 41038866 ~ 41039931 (-) True G1071725
TU1221758 other upstream 4269480 42045863 ~ 42062632 (-) True G1073009

Expression Profile