RNA id: TCONS_00042268


Basic Information

Item Value
RNA id TCONS_00042268
length 1326
lncRNA type intronic
GC content 0.37
exon number 1
gene id XLOC_020712
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2078625 ~ 2087850 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaataccggtaaagtctttccggaaattttccagatatttaccggtatcactgtgtgaaaggggctattgtctggAGGGTTAAGTTCCAACCCAACTCCAACATACTTATCTGTAGATTTTAAACAAGCCTAAAGAACTCaatcagtttgatcaggtgtgtttaatcagggttggtactaaactatgcagagctgcggctctccaggagcCCTGTGTGTTAAACTGACAGGAATTTGTGCTACTGCCATGGTTTGCAAATCATAGTGACCAAATAGTCTCAGATAGAAAAATCAGCGAGCCACCAAAATGTCTCAAGCGCCCACCAACTGGACATTTTGAGAACAGCGCCTGAGATTTTAAAGCTGGATAAAAACATTTTAGTGGACTTTGGCTGGACTTATTTAACTCAgtgggtcctatcatacacccggtgcatcAGACacaattttttgctattttcagaccaatgcagctctaattttcacattttttgtgtgaaaaAAAGTGCGCTAAAGTACTGTAGAAAAGGCTGTGATGTGTATACATGGAACAATAGCGCCCTCTTGTGACTTTACTAAGTATTACACTCATGACGCACCTTCCCCTTtaaattatccctttaatagtTAAAGAGGAAACAGTTCAGAGCACGGACAGACTTCGCTAGCATCACGTTGTTATTGCCGAGTGCGTTCAAATACAAGTGAGTGCCCATTTAAAGTGTTATTTGaagtgttatttatcatttatatagcacaatgTTTAGCTGTCTATGCCTACGTTCAGTATAATCACTGATTACTGGTTATAATCATATAAGTGTGTCACGGGCGTCGAGTATTGCATCATCCATCGGCTCGCTAATGAATACTTATGTGAGATAAGTAAAAGGGAATATTTGGGTATAATATTGTTAACTGTTTGTCACTTTGAGTATTTACATATTGTTACTTTATGTTATAAGTGATATTTATGGTGAGAGTTAAACCATAATGACTGATTCTCTCAAGTTTACATGTTAGTGTATATAATGCCAATTCACAAGTGTTATTCAATGTCATACATGTCTGAATATATCAGTATGTTGTTATTATGCTGCCTTATATTATAATATCTGACTAAGAAATATTTATGTGTAGCATATtgtcattatattattgtttCTGTTCAGCACTAATAGATATTTGTTATTTCTGTTCATTTAGAACCACTCATATTAAGCTACACTTCAAGGCATTGTGCTACTCTGCTGTACTTCCAAATCCAAGGACTGTAAACTCTCAACCAGtatctgtttattaaagtgtTCTTCGTCTCTGACAGGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042263 lncRNA downstream 65052 1960038 ~ 2021473 (-) True XLOC_020708
TCONS_00042264 lncRNA downstream 72192 1994728 ~ 2014333 (-) True XLOC_020709
TCONS_00042262 lncRNA downstream 83583 1944933 ~ 2002942 (-) True XLOC_020707
TCONS_00042261 lncRNA downstream 125820 1924305 ~ 1960705 (-) True XLOC_020706
TCONS_00042260 lncRNA downstream 150850 1924305 ~ 1935675 (-) False XLOC_020706
TCONS_00042269 lncRNA upstream 8930 2096780 ~ 2125152 (-) True XLOC_020713
TCONS_00042270 lncRNA upstream 36759 2124609 ~ 2173341 (-) True XLOC_020714
TCONS_00042271 lncRNA upstream 105614 2193464 ~ 2197537 (-) False XLOC_020715
TCONS_00042272 lncRNA upstream 105614 2193464 ~ 2399044 (-) True XLOC_020715
TCONS_00042273 lncRNA upstream 122085 2209935 ~ 2257835 (-) False XLOC_020716
TCONS_00040900 mRNA downstream 726669 1320991 ~ 1359856 (-) True XLOC_020693
TCONS_00040898 mRNA downstream 841299 1205787 ~ 1245226 (-) True XLOC_020688
TCONS_00040897 mRNA downstream 849522 1205787 ~ 1237003 (-) False XLOC_020688
TCONS_00040896 mRNA downstream 918234 1164656 ~ 1168291 (-) True XLOC_020686
TCONS_00040894 mRNA downstream 1006752 1073413 ~ 1079773 (-) True XLOC_020685
TCONS_00040902 mRNA upstream 786988 2874838 ~ 2886937 (-) True XLOC_020737
TCONS_00040903 mRNA upstream 807661 2895511 ~ 2922053 (-) False XLOC_020739
TCONS_00040904 mRNA upstream 809423 2897273 ~ 2929156 (-) False XLOC_020739
TCONS_00040905 mRNA upstream 823516 2911366 ~ 2929127 (-) True XLOC_020739
TCONS_00040906 mRNA upstream 843490 2931340 ~ 2937503 (-) False XLOC_020740
TCONS_00040899 other downstream 856503 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 926776 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 1269118 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 1739111 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040924 other upstream 1507418 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 2223953 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 2731560 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 2740106 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 2810736 4898586 ~ 4899116 (-) True XLOC_020764

Expression Profile

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