RNA id: TU1217993


Basic Information

Item Value
RNA id TU1217993
length 600
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G1069462
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 39113832 ~ 39114452 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaatgaggtgtgttcaaacttttgactggtactgtaaatgatCATCTCCAACTTTTCTAATCTGACGTGAAACAATGAAGGTCTGCCTGCACTcttaataaaaaaaatctattgaTTTATTCCACAATAGAGATGTTTTTTTCCCCATAACCTTAAAGGAGAATGTAGACCAAATCTACATGAAAGTTAGAGTATGAGCCAATTCCCAAACAATCCTAAATTAACAGCACTACTTCTCAGTACGAGTCCCCACAAAAGGCTTTCAGTAAGATTACAAACAAATCCAATAATAAGGACAACAAAAATTCAGACATACGTCTTTCCATTTAGAGATTAGGTGCTGACGTGTTACCTCCAAAAACTGTTTAAAAAGGTGTTTACCGTTAACCTATTTCATTTGGGTGAGGGGTAACATCTCGGGGGTTGTGAGGGTGTCCTGCAAGTAAGCTTCATCTTCTTTAGCTCCACACATCCAGAGAGTAGCGGCCCTTGgtcatcagcttcttgatgtaggccacagcctgtgtgtgtgtgaggcctcCGACCTCTTCAGCGATGTCATAGAAGGTGTTCTGCACGTCCCGTGCCATGTTCCGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1217984 lncRNA downstream 5693 39107064 ~ 39108139 (-) True G1069455
TU1217926 lncRNA downstream 94825 39014593 ~ 39019007 (-) True LOC110537576
TU1217801 lncRNA downstream 203544 38856053 ~ 38910288 (-) True G1069285
TU1217753 lncRNA downstream 337373 38767011 ~ 38776459 (-) True ripply3
TU1216651 lncRNA downstream 784293 38329320 ~ 38329539 (-) True G1068238
TU1218012 lncRNA upstream 9778 39124230 ~ 39185219 (-) True G1069480
TU1218031 lncRNA upstream 35099 39149551 ~ 39213845 (-) True G1069495
TU1218038 lncRNA upstream 42101 39156553 ~ 39193588 (-) True G1069498
TU1218042 lncRNA upstream 44716 39159168 ~ 39224164 (-) True G1069499
TU1218056 lncRNA upstream 66654 39181106 ~ 39263684 (-) True G1069506
LOC110537583 mRNA downstream 27933 39077640 ~ 39085899 (-) True LOC110537583
XM_021623729.2 mRNA downstream 36242 39073248 ~ 39077590 (-) True LOC110537580
XM_036937538.1 mRNA downstream 41312 39041272 ~ 39072520 (-) False LOC110537579
XM_036939506.1 mRNA downstream 85924 39015527 ~ 39027908 (-) False LOC110537576
XM_021623727.2 mRNA downstream 107713 38997382 ~ 39006119 (-) True LOC110537578
XR_005034977.1 mRNA upstream 126205 39240657 ~ 39245631 (-) True LOC110537596
XM_021623746.2 mRNA upstream 194764 39309216 ~ 39312123 (-) True LOC110537598
XM_021623752.2 mRNA upstream 221602 39336054 ~ 39342996 (-) False fkbp6
XM_021623751.2 mRNA upstream 221602 39336054 ~ 39343004 (-) False fkbp6
XR_005034981.1 mRNA upstream 221602 39336054 ~ 39343006 (-) False fkbp6
TU1217986 other downstream 4870 39108300 ~ 39108962 (-) True G1069456
TU1217947 other downstream 41360 39041520 ~ 39072472 (-) True LOC110537579
TU1216260 other downstream 1407461 37672182 ~ 37706371 (-) True LOC110539142
TU1216105 other downstream 1446578 37614168 ~ 37667254 (-) True LOC110537546
TU1216103 other downstream 1506817 37603165 ~ 37607015 (-) False LOC110537546
TU1218083 other upstream 221652 39336104 ~ 39337974 (-) True fkbp6
TU1220392 other upstream 1924414 41038866 ~ 41039931 (-) True G1071725
TU1221758 other upstream 2931411 42045863 ~ 42062632 (-) True G1073009
TU1223569 other upstream 3589551 42704003 ~ 42713923 (-) True G1074731
TU1224206 other upstream 4449333 43563785 ~ 43564240 (-) True G1075335

Expression Profile