RNA id: TU1218038


Basic Information

Item Value
RNA id TU1218038
length 844
lncRNA type read_through
GC content 0.46
exon number 5
gene id G1069498
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 39156553 ~ 39193588 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGGCTTTGGATCAGATTTGAATTCCCCCCGCGAATGGTCCTTGTTAGGtttggggaggggaagctgatcctagatctgtatctaGGGGAAACTTTAGCAGTTCTAATGTCTTCATTTGCCCCATTTCATTAGTCTTGTTGATTGATTGCTGATATCATTTCAGTCCTGGCCAACCAAGCTGTTGAGGTAGTCTTTATGACGTACATAACGGTCTATATATGCACTGTTGCTGTTCCGTCTCCTCTGGTCTGACGCCACaccttcctcttctccccctccgtctCAACATTGGGTGCAAACACACAGCATCGCAACACAGTAAGTGGCTGAGGATGTATGAATTCTGCTACCAAGTAAGTGACCCTTACTTGAGCTAGGGGTAAAACATTTTGACTTCAGCGGGTGCGGGTCACTGGCCTGTAGGGCTCCTTGCCTGTGTTGAAGTCTGGTTTGATGGTAACCACTCCATTTCCATCTGCTCTTATCGTGCAGACAAGCATTCCTTCTCCTTTTGGCCAAGTCTGAGAAATACAATAATAAAATGCCACTTTTCAATGCCTGAATTGGAATCTACTTCAAAGTTATTACATACAAAGTAGTATAATAAGTGTATAGGCTACATAGTGGTTTTTCCCCTTGTGCTACTCACTTGCCCGCTGGTCCCAGGTTCCCCATGATGTGCATGGTCTGTACAGGTGTGTTGACCATGTGGCTGGTCTTCAAAGTCCTCCGAGGGGTCCCAGGTAATCAGCCTGGACTTGGGGATGGTGCGGTCACTGCAGACCAACAGAATACCACAAACACATTTTGCATACAAGGGTATGGTGTAATGTGAACATACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1217988 lncRNA downstream 4563 39109658 ~ 39151990 (-) True G1069457
TU1217993 lncRNA downstream 42101 39113832 ~ 39114452 (-) True G1069462
TU1217984 lncRNA downstream 48414 39107064 ~ 39108139 (-) True G1069455
TU1217926 lncRNA downstream 137546 39014593 ~ 39019007 (-) True LOC110537576
TU1217801 lncRNA downstream 246265 38856053 ~ 38910288 (-) True G1069285
TU1218047 lncRNA upstream 1269 39194857 ~ 39249331 (-) True G1069503
TU1218066 lncRNA upstream 22700 39216288 ~ 39276066 (-) True G1069512
TU1217999 lncRNA upstream 38440 39232028 ~ 39240517 (-) False G1069468
TU1218000 lncRNA upstream 38440 39232028 ~ 39240517 (-) True G1069468
TU1218001 lncRNA upstream 42504 39236092 ~ 39236563 (-) True G1069469
LOC110537583 mRNA downstream 70654 39077640 ~ 39085899 (-) True LOC110537583
XM_021623729.2 mRNA downstream 78963 39073248 ~ 39077590 (-) True LOC110537580
XM_036937538.1 mRNA downstream 84033 39041272 ~ 39072520 (-) False LOC110537579
XM_036939506.1 mRNA downstream 128645 39015527 ~ 39027908 (-) False LOC110537576
XM_021623727.2 mRNA downstream 150434 38997382 ~ 39006119 (-) True LOC110537578
XR_005034977.1 mRNA upstream 47069 39240657 ~ 39245631 (-) True LOC110537596
XM_021623746.2 mRNA upstream 115628 39309216 ~ 39312123 (-) True LOC110537598
XM_021623752.2 mRNA upstream 142466 39336054 ~ 39342996 (-) False fkbp6
XM_021623751.2 mRNA upstream 142466 39336054 ~ 39343004 (-) False fkbp6
XR_005034981.1 mRNA upstream 142466 39336054 ~ 39343006 (-) False fkbp6
TU1217986 other downstream 47591 39108300 ~ 39108962 (-) True G1069456
TU1217947 other downstream 84081 39041520 ~ 39072472 (-) True LOC110537579
TU1216260 other downstream 1450182 37672182 ~ 37706371 (-) True LOC110539142
TU1216105 other downstream 1489299 37614168 ~ 37667254 (-) True LOC110537546
TU1216103 other downstream 1549538 37603165 ~ 37607015 (-) False LOC110537546
TU1218083 other upstream 142516 39336104 ~ 39337974 (-) True fkbp6
TU1220392 other upstream 1845278 41038866 ~ 41039931 (-) True G1071725
TU1221758 other upstream 2852275 42045863 ~ 42062632 (-) True G1073009
TU1223569 other upstream 3510415 42704003 ~ 42713923 (-) True G1074731
TU1224206 other upstream 4370197 43563785 ~ 43564240 (-) True G1075335

Expression Profile