RNA id: TU1218047


Basic Information

Item Value
RNA id TU1218047
length 1616
lncRNA type read_through
GC content 0.43
exon number 3
gene id G1069503
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 39194857 ~ 39249331 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aattattgtgcaatttacactaagtgtacaaaacattaaggacacctgctatttccatgacagactgaccaggtgaatccaagtgaaagctatgatcccttattgatgtcacttgtagatgaaggggacaggacaggttaaagaatgatttttaagcctggagacaattgagacatggatagtgtatgtgtgccattcagagggtgaacaggcaagacaaaagatttaagtgtctttgaacggagtatggtcgtaggtgccaggcacaccggtttgtgtcaagaactgcaacactgatgggtttttcacgctcatgTTCCgttccaccaaccaaaggacatccagccaacttggcaactgtgggaagcattggcttcaacatgggcctgcatccctgtggaacgcatttaacaccttgtagaatccataccccgataaattgaggctgttctgaggacaaaagggggtggggggataactagatattaggaaggtgtccttattattttgtacactcagtgtataacctaTAGGTACTATCTTTaccagcatcataaaagctgatattATTTCATGGGCCTATTGCAACGAAGATTGGCCACTAGAATATTGCCAGTTTATATTCATAACTAAAAGTTCACCTAATTGTATCTTCTGTTATAAAGACCATATTCAAATGAATAAAAACGAAAATAGAAAActgtttcccatctcaagagaTTCAATTAAAATATGACTACAATAAGTGCCTATTAAGTAAAGGCTGACCATAttatatttttttgttattttttttcttttaacCCCTTTATCTCCCCAATTTTCGTGGTATCatattggtagttacagtcttgtctcattgctgcaactccctacggactcgggagaggcgaaggtagagagccatgcgtcctccacgaaacacgaccctgacaagctgcactgcttcctgacacaatgcccgcttaacccggaagccagccacaccaatgtgtcggaggaaacaactCTCCCATTCACCTGTGTGAACTTCATCTTCGTGGCATGCTAGCCTTTTACCGGCTGCGGAGAGCCTTTTCTGTTTGCATTTTGTTGTGCACCAGGTTTTCCTGTCTTTCCATGTTCTGTTTGTGAGAGCTGGCTCTGACCCATAACAGTCAATCCTCTTTGCCAGGAACCTTCTTTAGCACTTTACATTTTCCCAAATGCTTCCAAACTGATGCTTTCTCACAGCTGCTCTTAGTCTTGGGTTGAGAAGTCATTCTCCAAACCTAATCGCAAACAAAGAAAAGATTAAAACACATGACGGTCCAACACAATAGGGGAGGGGGGCATAGGGAAGGTAAGGGAGAGGAGATAAAAAGAAAAGACTTCCTCCGTGTCAGGTAAGCAGTCTCGAAGTGTACCCTCACCAACTTACCGGACTGAGTGAGTTCTGAACATCCCTCGCTGTCCTCTGTTCCTGCATCCAAGTCTTCTTGGGCCTCTTTCTGGTGTCTGTCTTGACTCTTTATTACGTTTTCTCAGTTCTTTCTCAGGCTTGCCTGAAAAACACAAAAGGATGGAACATACATAAGAGTAACAACAAATCCACATATTAGCAAGCAACgacatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1218038 lncRNA downstream 1269 39156553 ~ 39193588 (-) True G1069498
TU1218012 lncRNA downstream 9638 39124230 ~ 39185219 (-) True G1069480
TU1217988 lncRNA downstream 42867 39109658 ~ 39151990 (-) True G1069457
TU1217993 lncRNA downstream 80405 39113832 ~ 39114452 (-) True G1069462
TU1217984 lncRNA downstream 86718 39107064 ~ 39108139 (-) True G1069455
TU1218091 lncRNA upstream 32327 39281658 ~ 39286252 (-) True G1069533
TU1218098 lncRNA upstream 38622 39287953 ~ 39288179 (-) True G1069540
TU1218101 lncRNA upstream 44113 39293444 ~ 39293906 (-) True G1069543
TU1218102 lncRNA upstream 46294 39295625 ~ 39295859 (-) True G1069544
TU1218171 lncRNA upstream 146250 39395581 ~ 39396334 (-) True G1069600
LOC110537583 mRNA downstream 108958 39077640 ~ 39085899 (-) True LOC110537583
XM_021623729.2 mRNA downstream 117267 39073248 ~ 39077590 (-) True LOC110537580
XM_036937538.1 mRNA downstream 122337 39041272 ~ 39072520 (-) False LOC110537579
XM_036939506.1 mRNA downstream 166949 39015527 ~ 39027908 (-) False LOC110537576
XM_021623727.2 mRNA downstream 188738 38997382 ~ 39006119 (-) True LOC110537578
XM_021623746.2 mRNA upstream 59885 39309216 ~ 39312123 (-) True LOC110537598
XM_021623752.2 mRNA upstream 86723 39336054 ~ 39342996 (-) False fkbp6
XM_021623751.2 mRNA upstream 86723 39336054 ~ 39343004 (-) False fkbp6
XR_005034981.1 mRNA upstream 86723 39336054 ~ 39343006 (-) False fkbp6
XM_021623750.2 mRNA upstream 94284 39343615 ~ 39355937 (-) False zgc:171740
TU1217986 other downstream 85895 39108300 ~ 39108962 (-) True G1069456
TU1217947 other downstream 122385 39041520 ~ 39072472 (-) True LOC110537579
TU1216260 other downstream 1488486 37672182 ~ 37706371 (-) True LOC110539142
TU1216105 other downstream 1527603 37614168 ~ 37667254 (-) True LOC110537546
TU1216103 other downstream 1587842 37603165 ~ 37607015 (-) False LOC110537546
TU1218083 other upstream 86773 39336104 ~ 39337974 (-) True fkbp6
TU1220392 other upstream 1789535 41038866 ~ 41039931 (-) True G1071725
TU1221758 other upstream 2796532 42045863 ~ 42062632 (-) True G1073009
TU1223569 other upstream 3454672 42704003 ~ 42713923 (-) True G1074731
TU1224206 other upstream 4314454 43563785 ~ 43564240 (-) True G1075335

Expression Profile