RNA id: TU1218259



Basic Information


Item Value
RNA id TU1218259
length 224
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1069685
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 39564043 ~ 39564266 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTGTAGTCACTTCTCTGGCGCCTTAAACCCTAACCGACAATGTCCACATAAGGTGGACAATTACTTTATTTTCACCTCCCACTTAAATGTGGACATTGGCCATATTAAGGAAATTCAGACCTTCAACGGAAAAGCTTAAAACAAACAAACTGTGTCCAGGATTCAATTCAAAACCACGCTATAGACCACTTGACATTTAAAGGcaatttccaattgagccgac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1218253 lncRNA downstream 3861 39559963 ~ 39560182 (-) True G1069679
TU1218226 lncRNA downstream 46491 39517323 ~ 39517552 (-) True G1069652
TU1218224 lncRNA downstream 48171 39515662 ~ 39515872 (-) True G1069650
TU1218207 lncRNA downstream 59367 39504125 ~ 39504676 (-) True G1069635
TU1218181 lncRNA downstream 144699 39419107 ~ 39419344 (-) True G1069610
TU1218261 lncRNA upstream 735 39565001 ~ 39565209 (-) True G1069687
TU1218262 lncRNA upstream 982 39565248 ~ 39565473 (-) True G1069688
TU1218268 lncRNA upstream 22274 39586540 ~ 39587460 (-) True G1069693
TU1218573 lncRNA upstream 152021 39716287 ~ 39716539 (-) True G1069955
TU1218538 lncRNA upstream 163511 39727777 ~ 39736824 (-) True ncam1a
XM_036937560.1 mRNA downstream 18010 39518597 ~ 39546033 (-) False LOC110537607
XM_036937566.1 mRNA upstream 4095 39568361 ~ 39690332 (-) False LOC110537608
XM_036937567.1 mRNA upstream 9022 39573288 ~ 39689328 (-) False LOC110537608
XM_036937568.1 mRNA upstream 9022 39573288 ~ 39690332 (-) True LOC110537608
XM_036937570.1 mRNA upstream 163508 39727774 ~ 39933533 (-) False ncam1a
XM_036937583.1 mRNA upstream 163508 39727774 ~ 40043402 (-) False ncam1a
TU1218083 other downstream 226069 39336104 ~ 39337974 (-) True fkbp6
TU1217986 other downstream 455081 39108300 ~ 39108962 (-) True G1069456
TU1217947 other downstream 491571 39041520 ~ 39072472 (-) True LOC110537579
TU1216260 other downstream 1857672 37672182 ~ 37706371 (-) True LOC110539142
TU1216105 other downstream 1896789 37614168 ~ 37667254 (-) True LOC110537546
TU1220392 other upstream 1474600 41038866 ~ 41039931 (-) True G1071725
TU1221758 other upstream 2481597 42045863 ~ 42062632 (-) True G1073009
TU1223569 other upstream 3139737 42704003 ~ 42713923 (-) True G1074731
TU1224206 other upstream 3999519 43563785 ~ 43564240 (-) True G1075335
TU1224273 other upstream 4096293 43660559 ~ 43660837 (-) True G1075399

Expression Profile