RNA id: TCONS_00042274


Basic Information

Item Value
RNA id TCONS_00042274
length 1101
lncRNA type read_through
GC content 0.42
exon number 2
gene id XLOC_020716
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2209935 ~ 2433876 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGTGTTGTTTCAAGTCTCCAGCTCtaataaaactcttcccacactgagtacatgcgcacggtttctctccagtgtgaattctctcaTGTCTTCTCAGTGATTGTGGCCAAGCAAATCCCtggtcgcagtgtgaacacttgtacggtttctctccagtgtgcatCATCTGGTGTTGTTTCAAGTTTCCAGAGCtagtaaaactcttcccacactctaAGCACACAAagtctctcacaccagtgtggaccttctgatgtacttttaaataaagtttatgtctaaaactctttccacactcagagcATGAATAAGGCTTCTCGTTTGTGTGAACTCTAAGATGTTTCCTCAGATCTGAAGGTCTCAAAAATATCTTGCCGCACTGATCACACTTGtgtggcttctctccagtgtggatcagcatGTGATTATTAATGGATGAAGACtgcctgaaactcttcccacactgagtacatgtgtacggtctctctccagtgtgaatcctcttgtGTGTTTTCAATGTTTGTAACCTTCTGAATCTCTTCTCGCAGTGTGgacacttgtacggtctctctccagtgtgcatCCTCTGGTGCAGCTTCAAGTCTTCAGCTCTAAAAAAACTCTTCTTACACTCAGAGCAGACAAACTCTTTCACGCCAGTGTGGATCTTATCATGTTTTCTTAAATATGACAGCagtgtaaaactctttccacactcagcaCAGGAATAAGGCCTCTCCTTCGCATGAACTCTAAGATGTCTCTTCAGAGCTGAAACTATCAAAAACGTTTTGCTGCAGTGATGACATCTGAGTATTTTCTCTCCAGCGTGAGTCATCATGTGACACTTGAGACTGTATTCATAGCTGAAACTCtgtccacactgagtgcaggtgaaactatTCACGGCTGTTCTTTCTATTAAAAAATCTTCAGTCTTTGTCCGAGCTTCAATTTCACtcttgacatgatgtttctcctcttcttcactcagttcttcactctcctccttcacaATCACACCTGAAAATGAATAAGTCACATGTTAATCTGCTAGTGTTTTACACTCTTGAATAGTTTGTAACCGTACAGGCAAACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042271 lncRNA downstream 12398 2193464 ~ 2197537 (-) False XLOC_020715
TCONS_00042270 lncRNA downstream 36594 2124609 ~ 2173341 (-) True XLOC_020714
TCONS_00042269 lncRNA downstream 84783 2096780 ~ 2125152 (-) True XLOC_020713
TCONS_00042268 lncRNA downstream 122085 2086525 ~ 2087850 (-) True XLOC_020712
TCONS_00042267 lncRNA downstream 122730 2078625 ~ 2087205 (-) False XLOC_020712
TCONS_00042281 lncRNA upstream 32397 2466273 ~ 2482489 (-) True XLOC_020722
TCONS_00042282 lncRNA upstream 32463 2466339 ~ 2496857 (-) True XLOC_020723
TCONS_00042283 lncRNA upstream 37388 2471264 ~ 2524501 (-) True XLOC_020724
TCONS_00042284 lncRNA upstream 87056 2520932 ~ 2539642 (-) True XLOC_020725
TCONS_00042285 lncRNA upstream 94907 2528783 ~ 2538625 (-) True XLOC_020726
TCONS_00040900 mRNA downstream 850079 1320991 ~ 1359856 (-) True XLOC_020693
TCONS_00040898 mRNA downstream 964709 1205787 ~ 1245226 (-) True XLOC_020688
TCONS_00040897 mRNA downstream 972932 1205787 ~ 1237003 (-) False XLOC_020688
TCONS_00040896 mRNA downstream 1041644 1164656 ~ 1168291 (-) True XLOC_020686
TCONS_00040894 mRNA downstream 1130162 1073413 ~ 1079773 (-) True XLOC_020685
TCONS_00040902 mRNA upstream 440962 2874838 ~ 2886937 (-) True XLOC_020737
TCONS_00040903 mRNA upstream 461635 2895511 ~ 2922053 (-) False XLOC_020739
TCONS_00040904 mRNA upstream 463397 2897273 ~ 2929156 (-) False XLOC_020739
TCONS_00040905 mRNA upstream 477490 2911366 ~ 2929127 (-) True XLOC_020739
TCONS_00040906 mRNA upstream 497464 2931340 ~ 2937503 (-) False XLOC_020740
TCONS_00040899 other downstream 979913 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 1050186 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 1392528 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 1862521 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040924 other upstream 1161392 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 1877927 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 2385534 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 2394080 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 2464710 4898586 ~ 4899116 (-) True XLOC_020764

Expression Profile

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