RNA id: TU1220277


Basic Information

Item Value
RNA id TU1220277
length 4060
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G1071612
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 40876111 ~ 40938063 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACAAGaactcattttttttttgtaaaaatgtctattAATGAACCAATACAAAATGTGTATGGGAATGTGAATATCTTTTTTCTTCATTAATACACATTAACATTGCCCAAGTAGACCTACAGCAGAAAGACAAAAAATAATAAATGAAGACAATGAATTGATAAACAACCGAACGTCCTGGGAGGAAAACCAAACATGAGAGACGTGTTTAAATTGATAGTTGCACAGCCACAGCTGAgtgtattctgttcctgtgtcATTTTAACAAACTGATACATTATGAACTATGTCTATACAAAGTCATACTTAAACACATATTACACAGTTCACTGGATATTTAAGAAAATACATAAAACATGTACAGCTTaaatgcaaaaaaacaacaaaaaaaacaccagTTGTCTCTTGATCTAAAATCATTAgcgttttttttaatcaatttgtgGTGGGGCCTAGACTTTGCATTCTACCTGAGATGCAATCACACCATTCAATGCACATGAACCTgagaccagtggtgtaaagtactttagtaaaaatactttaaagtactaccaAGTCGTTTTTTGGGTATCTATCATTTACtttgttatttatatttttacttccctacattcctaaagaaaagcatgtactttttactccatacattttctctgacacccaaaagtactagttacattttgaatgcttagcaggacaggaagatggtccaattcacgcacttatcaagagaacatccctggcatccctactgcctctgatctgacggacttactaaacacaaatgcttcgtttgtaaattatgtgttggagtatgcccctggctatcagcaaacaaaaaaaacaagaaaattgttcTGCCTGGTTTACTTaatttaaggaatttgaaatgatttatacttttacttttgattcttaatatagttaaaaccaaatacttttagacttttactcaagtagtattttactggcttttcactttcacttttacttgactCATTTTCTAATATGGTATCTTTGATTTGactaaagtatgacaattgggtactttttccaccaccgcCTGAGACAGGAATTAACAAAAGAATGTAAAAAgtaatttgataaaataacacGGTCAGACTACCAAGTTAACAGTACCTTGAGTCACAAAGGGGCATTTCATGAGAAAAATAAAACAGATAACACCTAGGAAAAAGAAGTGACAAAAAACATTCTATACCTTTCTGGACTTTTCACATCCATCCAAATAGTTGTCCATCATTGAattatatttcagtcttcatATCACCGGTGTTAAGTAGGTGCTCATACAAATTAACATTTATTTCATGTCAACTATGCTCGAGATGCATACTTTCCACAATATACTCCTGTTTCCTATTGGTTCTGAAAGTGGTCCCCATTCCAAACCACAACACACATAAGTAAAAGGTTAAAAAGCATAAACAAACATATATATCGACCCAGTCCACACAGCGGTGAGTACATTTAATAAAATCTCCACCTACAGAGAGAGTGAATAGATGTGTTCACTTGGTAAGAACATACTTTTTTAGGTCCAGTTTTGAATGGAAGCCACCACACTTTTTACCGAAGCAAAATAATGCTCAATGTTAAATACAAGTCACACAACCTCAATCTAAACGATGGTAACATTCTCTCTGTTGTTTGTTCCGTTTAAACAACAGAGGGAATCCAAAATGTTTCATATGATGTCACAGTCTAAAATGAAGCATTTAAACGAGTCAGGAAGCCACCGCTGTCCTGATAAACAAACAGCATTGTCGTCGTGGTACAGTGTTAAATCAGTGATAGCTCCTTTTCCAATATATCATATTTGGAATATATGTCAAATCAAACATGAAAGCAACTTCACCTCTTCAAACTCATTGTCATATCAACCACCTCAGCAGGACAGTAACTACATTGAACAGCAATGCTGACTGTGGTGATGTAGAAATGAAATGAAAAGTAATAGATAACAAAAAATGACTTTTGGCATTCCCCAATTCTCCCCCACTGGCCCTTTCAACATGGTCTCATCTTAAAGCTTAGGCAGGTCATTCacaaagaaagaaaagagaaatggTGCACACATACATGCAATGTGGTGTTGACTGACTGTTTTGGCAAGTGAAAATTGTTGCATCATGACAAGACCATGTACAGTCCAGAGGCTAGAAGTGTGATGGTAGTGGCATAAGGCCGTCTCCAGTGGTAATTCCTAGTGACACACACGCTCCTCAACTGTTATCACCCATTCAGGAGTGTTGTACAGTATGAAGTGACAAAACCCACAACAAACAGCTTGTGATAATCATAAAAACCACAAAATGATTCTGTCATGAAATTCCACTGGGATGTAAAAAATATTTCCTGGCACGTGTTTATGTATAATACATTGGTGTAAATGTATTGGCTGGACATAGTTTGTATATTGTTGGAACTACTGAACTTGTCTTGAAATCATATCCCTTGTAAAAATGTCTTAGATACAATGATTGTATGTTCTTTGCTCAGAAGCTATGTATCCCCTATTTTTCACCATCTCCTTCAAAATCCTATACCCCTTTTACAGCTCTAGTTCTAATTTTACACACAAAGCTGGAAAAATACAACTAAATGTGTGATTTACCTGTTCAGTATATACCAACATGAAGGTAGTATCACTTTATTAATGCAGTAAGTACCTCACAACCTAGATTGATATCTCTCTTATAATGAGAATATTCATCTTTGATAATCAACATTATAGTTTGGAGATGTCTTCCGGTCATTTCGCATCGAAATGAATCCTATCCGTGTTACATAGTTTGTTTTTCCCCCTAACTATATTACAGCTTGGCTAAACTGAGGCATCTTGATTTAGAGACAAAGGGTGAGTACAACACCAAGGAAATcattaaaaacaaattatttttgTCAGATTCAAAAATCTGAATGAGAGAGGATGTAAAACCCCAAAATGTCAtcacaaaaacagaaataaatgccTGCCGGGGGATTGCGGTTCCATTCAGTGGAACAGAACAAAAACATCATTGTACAGAGAATAAAAGGTGAAAATAATGAATTGAAAATGCCTCTAAGTTCAGCATAGCGAGGGTGAAATAATGTGCCTTCTACTTTCCTTATTCCAAATTGTGGCAATCTTTTAAATGCACTGGCATATCTAATTTGAAAAACAAAttgaagagacagaggaaggaaTACAAGTGATCCACGGTGATGAGGAATTGGCCCCGATACAAAGAAAACAAGGACAGTTTTCGAGACCAATTGTCCTCTACTGTCTTCCTTTAGattatatttctgtgtgtttgtgttttgaagaggggggagggggcacAATGTTATTTATGGGTAATAATATTTTTCTTATATTCATTTTTCGAATATGATACGTAAAGCGTTGGATGTGTTTTGGAGCTTTCAAAAGGTTTTGAAAAAAAGAAAGGTGGTGGTTGAGACCTGGCCTGCTCACAGTATAGTGGAAATAGGGTTCTTATGAGCTTTTGGTATGCAGGAGAGTACGTGTGTGCGAACACAgtgggagagatgaacagagccGCTGTGTAATTTTACCCTCATAGGAAAGCCAACAGCACAATGATAAtgaagagagtggaagagggaggGTGGGGAGCAACAGGGCATGTTGATGGGGGGGAAATAAAGAATGAATAGAAAATAAATTCAGAACAAGGCACAGAATTTTCTGCAAATGGTTGAACTAAACAAAATTCGTACCAGCAGTTTTGGGAGGTGTCGCATGGTGACGCTCTCTTCTACAGTGATTTCTGGCAACCCCTGAACCCCCCACCCTTACCAAAAACCTCCCCTCCCCATATTTtcaccttatacacacaaaacCTTTCCTCCTCAGCTGCAGAGACTGGACAATACATTGTTCAATCCCGGGCAATCACCCCTAAAACCAACCTACCACTCCTTCTTCTCGTCCGAGTTGTTGTGGCCCCCCTCTGCGTTGATAATGGCTGTGTCTGCATCTGCTGCATCGTCGGCTCCTTTAGCTTCATGCGTGAAGTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1220089 lncRNA downstream 259367 40618538 ~ 40674523 (-) True G1071425
TU1219344 lncRNA downstream 487126 40446379 ~ 40446764 (-) True G1070703
TU1219328 lncRNA downstream 495240 40438424 ~ 40438650 (-) True G1070687
TU1219313 lncRNA downstream 502785 40430827 ~ 40431105 (-) True G1070672
TU1219296 lncRNA downstream 519388 40413207 ~ 40414502 (-) True G1070655
TU1220322 lncRNA upstream 3467 40941530 ~ 40941762 (-) True G1071656
TU1220330 lncRNA upstream 13758 40951821 ~ 40952094 (-) True G1071664
TU1220331 lncRNA upstream 14080 40952143 ~ 40952468 (-) True G1071665
TU1220332 lncRNA upstream 15746 40953809 ~ 40954090 (-) True G1071666
TU1220373 lncRNA upstream 76518 41014581 ~ 41014886 (-) True G1071707
XM_036937580.1 mRNA downstream 890401 39727774 ~ 40043489 (-) False ncam1a
XM_036937569.1 mRNA downstream 890402 39727774 ~ 40043488 (-) False ncam1a
XM_036937573.1 mRNA downstream 890402 39727774 ~ 40043488 (-) False ncam1a
XM_036937574.1 mRNA downstream 890403 39727774 ~ 40043487 (-) False ncam1a
XM_036937596.1 mRNA upstream 155119 41093182 ~ 41098902 (-) False sc5d
XM_021623781.2 mRNA upstream 155119 41093182 ~ 41101786 (-) False sc5d
XM_021623779.2 mRNA upstream 155119 41093182 ~ 41101891 (-) False sc5d
XM_021623780.2 mRNA upstream 155119 41093182 ~ 41101891 (-) True sc5d
XR_005035323.1 mRNA upstream 156519 41094582 ~ 41094719 (-) True LOC118937914
TU1218083 other downstream 1595916 39336104 ~ 39337974 (-) True fkbp6
TU1217986 other downstream 1824928 39108300 ~ 39108962 (-) True G1069456
TU1217947 other downstream 1861418 39041520 ~ 39072472 (-) True LOC110537579
TU1216260 other downstream 3227519 37672182 ~ 37706371 (-) True LOC110539142
TU1216105 other downstream 3266636 37614168 ~ 37667254 (-) True LOC110537546
TU1220392 other upstream 100803 41038866 ~ 41039931 (-) True G1071725
TU1221758 other upstream 1107800 42045863 ~ 42062632 (-) True G1073009
TU1223569 other upstream 1765940 42704003 ~ 42713923 (-) True G1074731
TU1224206 other upstream 2625722 43563785 ~ 43564240 (-) True G1075335
TU1224273 other upstream 2722496 43660559 ~ 43660837 (-) True G1075399

Expression Profile