RNA id: TCONS_00042277


Basic Information

Item Value
RNA id TCONS_00042277
length 2607
lncRNA type read_through
GC content 0.46
exon number 2
gene id XLOC_020718
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2233989 ~ 2275936 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atctctgggttttgttcaggagtgagggaaggatggaatgtgagattgaccggcggattggtgcagcagcagcagtaatgcggtcgatgtgccggtccgttgtggtgaagatgagccaaaaggcaaagctctcaatttgctgatcaatctacgttcctactctcacccatggtcatgaccgaaaggacaagatctcggatacaagaggctgaaatgagtttccttcaggGGTGGCAGGGATTAAAgatgctgctcctccacattgagagaagtcagctgaggtggctcgggcatctgtttcggatgcctcctggacgcctacctagggaggtgttccaggcatgtcccaccggatggaggcctcggggaagacccaggacacgctggaaggactatgtctctcggctggtctGGGAATGCCTTGGGATCCCCTCGGAGGAGCAGGAGGacgtgtctggggagagggaagtctggggttctctcctaagactgctgcccccactaCCCAGCCCCAGAAAAGAggcagaaaatgaattaatggatgaataCATTTTCTGGAAGAAATAACAAAAACGAGAGGATTGTGGGATATGGGTCTGAAATAAGTATAATGGGCGTGACGCACTTGCGCCTTCCAGGCACACCAAGTTGAATGAATGCCACAAGTGCACTGAGAGTCACATGACAATaactgactgatcagctttatactttataacagGGGTGACCAAACTTGATCCTGCatgtccggtgtcctgcaggttttagctccaatcctaatcaaacacacctgaacgagctaatcaaagtcttactaggtatacttgaaacacctaggcaggtgtgttgaggcaagttggagctaaaacctgcagggcaccagacctccaggagtgagattggtgacccctgctttataaggtatatacacatttcggtaagaCTAATTACCTCTAGACtgacacagaacacccaaacactgcagttctTTTAGGTTTTCTCCAAAAATAAatcttgtatcagagctgcagcaatgttttgtcagcttgtcatcctctgagaatcCGGTTGATGGTCAACTAGCAACATACGAACCCCATTCTCCTCCTGTGTATGAGCTAGAAAATGTTTCCTCAGCTCTATAGCCCTGAAAAATGTTTTGTCGCATTGGTCACATTTatgcggtttctctccagtgtggcgcAGCATGTGTACGTTAAGGGAAGACGAAGctctgaaactcatcccacattgAGTAcacgtgtacggtttctctccagtgtgaacacTCTCATGTACTCTCAGATTTCCTGATTGACTGAatgtcttgtcgcagtgtgaacacttgaagggtttctctccagtgtggatcctctggTGTCGTTTCAAGCCGCTAGCTGTAATGAAACTCTTCTCGCACTCAAGGCACACAAACTCCTTCAGACCAGTGTGGATCTGCTCATGTGCATTTAACTCTCGTAAACgtttaaaactcttcccacactcagagCACGGATAAGGCCTCTCGTTTGTGTAAACTCTAAGATGCTCCTTCAGCTCTGAAgccctcaaaaatgttttgccgcactgatcacacttgtgtgttctctctccagtgtggatcatctcaTGTGTTGTCATGAGTCTTAACTggctgaatctcttgtcgcagtgtgaacacttgtaaggctTCTCTACAAGGTgtatcatcatgtgttgattaaggtttgatggTTGCTTACAACTCTTTCCACAAGGACTCTGTGTGTATATCTTCTTTCCCGTGTGAATCCTTATCTGATGGTCTTTTAAATTTGACAGACGACTAAAATTCTTTCCACACTCAGAACAGGAATGAGGCTTCACGATTGTATGAACTCGAAGATGCTCCTTCAGATCTGAAGCCTTCAAAAATGTTTTACCGCACTGATCACAGTCgtgtgttttctctctagtgtggatcatCTCATGTGCTTTCATGTGTCTTAACTggctgaatctcttgtcgcagtgtgaacacttgtaaggctTCTCTACAATGTGGATCAGCATGTGTTTATTAAGAGTTACCGATTGTTTAAAACTCATCCCACACACAGTACATGTGAAGGGTCTCTCTTCAGTGTGGACTATCTGGTGTCGTTTCAAGTCTCCAGTTTtaataaaactcttcccacagtcGATGCACACAtgctctctcacaccagtgtggaacTTCTGATGCTCATTCAAAATTGACCGCTGagaaaaactctttccacactcagcgCACGAataaggcttctcctttgtatgaACTCTAAGATGTCTCTTCAAAGTTGAAGACCTTGAAAAGAGTTTGTCGCACTGATCACACTTgtgtggtttctctccagtgtgggtcttctcATGCCTCTTCAGGTGGGCTGAACAAtggaatctcttgtcgcagtgggaacacttgtaaggtttctctccagtgtggattctcatgtgaaCGTTGAGGTCGTATTTCTggttaaaactctttccacactgagtgcaggtgaaacctTTCCTTTTCTTTAGAAAATTGTGTTCGTCCTCTGCGTGAGTTTCTTCTTCACtcttgacatgatgtttctcctc

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0007492 endoderm development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0019371 cyclooxygenase pathway biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0043034 costamere cellular_component
GO:0004666 prostaglandin-endoperoxide synthase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042275 lncRNA downstream 13255 2224761 ~ 2228252 (-) True XLOC_020717
TCONS_00042266 lncRNA downstream 17520 2061685 ~ 2223987 (-) True XLOC_020711
TCONS_00042271 lncRNA downstream 43970 2193464 ~ 2197537 (-) False XLOC_020715
TCONS_00042270 lncRNA downstream 68166 2124609 ~ 2173341 (-) True XLOC_020714
TCONS_00042269 lncRNA downstream 116355 2096780 ~ 2125152 (-) True XLOC_020713
TCONS_00042278 lncRNA upstream 8451 2253538 ~ 2259552 (-) True XLOC_020719
TCONS_00042279 lncRNA upstream 12836 2257923 ~ 2267553 (-) True XLOC_020720
TCONS_00042280 lncRNA upstream 21119 2266206 ~ 2348036 (-) True XLOC_020721
TCONS_00042281 lncRNA upstream 221186 2466273 ~ 2482489 (-) True XLOC_020722
TCONS_00042282 lncRNA upstream 221252 2466339 ~ 2496857 (-) True XLOC_020723
TCONS_00040900 mRNA downstream 881651 1320991 ~ 1359856 (-) True XLOC_020693
TCONS_00040898 mRNA downstream 996281 1205787 ~ 1245226 (-) True XLOC_020688
TCONS_00040897 mRNA downstream 1004504 1205787 ~ 1237003 (-) False XLOC_020688
TCONS_00040896 mRNA downstream 1073216 1164656 ~ 1168291 (-) True XLOC_020686
TCONS_00040894 mRNA downstream 1161734 1073413 ~ 1079773 (-) True XLOC_020685
TCONS_00040902 mRNA upstream 629751 2874838 ~ 2886937 (-) True XLOC_020737
TCONS_00040903 mRNA upstream 650424 2895511 ~ 2922053 (-) False XLOC_020739
TCONS_00040904 mRNA upstream 652186 2897273 ~ 2929156 (-) False XLOC_020739
TCONS_00040905 mRNA upstream 666279 2911366 ~ 2929127 (-) True XLOC_020739
TCONS_00040906 mRNA upstream 686253 2931340 ~ 2937503 (-) False XLOC_020740
TCONS_00040899 other downstream 1011485 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 1081758 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 1424100 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 1894093 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040924 other upstream 1350181 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 2066716 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 2574323 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 2582869 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 2653499 4898586 ~ 4899116 (-) True XLOC_020764

Expression Profile

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