RNA id: TCONS_00042279


Basic Information

Item Value
RNA id TCONS_00042279
length 894
lncRNA type read_through
GC content 0.44
exon number 2
gene id XLOC_020720
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2257923 ~ 2267553 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTAtctcaaacacagaacacccaaacactgtagtgctttttaattttctccataaataaaacttgtatcagagtgacagcaatgttttgtcagcttgccAATACTTCCTCAGCACATTTTCACAGAATGCAACAAGTGACATGATCAAACGCCTTCATCATGTCCACAGAAGCACATGGCAAACTCCCATCAACCAAAAGCACAAGACCTTAGAAACAAGATTGAAGACCTTATGagcatgactgaaaggacaagtgGCTGAAATGAGCTTCATTTGCAGGGTGACAGACAACACTCTTAGGTAAAGGGTGAGGAGTTCTGTCATCAAGAGGAGTCCAGAGTAGGGCCATTGCTCTCTTACATCAAGAAGAGCTAGCTGAGGTGGTTTGGGCTCTTTCGAAAGATTCCTGGACGCCTACTTGTGAGTCgtctcatgtgttttcagatgtCCTCTATGTCTGAATGctttgtcgcagtgtgaacacttgaaaggtttctctccagtgtggatcatcatgtgctGCTTCAGGTCTGGAGCTCTCATAAacctcttcccacactgagtacatgtgtacggtttctctccagtgtgaacacTCTCATGTGTCTTCAGGTTTCCagattgactgaatgttttgtCGCAGTGTGagcacttgtacggtttctctccagtgtggatcatctggTGTCGTTTCAGATCTGGAGCTCTAATGAAAGTCTTCTCGCACACGAagcacacaaactctctcacCCCAGTGTGGATCTTCCGATGCGAGTTTAATTCTTGTAAACGTTTAAAACTCATTTTACACACAGGACATGAGtaaggcttctcctttgtatgaACTCTAAGATGGTCCGTCAGATAAGAAGCTCTCAAAAATGTTTTACCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042273 lncRNA downstream 88 2209935 ~ 2257835 (-) False XLOC_020716
TCONS_00042277 lncRNA downstream 12836 2241507 ~ 2245087 (-) True XLOC_020718
TCONS_00042275 lncRNA downstream 29671 2224761 ~ 2228252 (-) True XLOC_020717
TCONS_00042266 lncRNA downstream 33936 2061685 ~ 2223987 (-) True XLOC_020711
TCONS_00042271 lncRNA downstream 60386 2193464 ~ 2197537 (-) False XLOC_020715
TCONS_00042281 lncRNA upstream 198720 2466273 ~ 2482489 (-) True XLOC_020722
TCONS_00042282 lncRNA upstream 198786 2466339 ~ 2496857 (-) True XLOC_020723
TCONS_00042283 lncRNA upstream 203711 2471264 ~ 2524501 (-) True XLOC_020724
TCONS_00042284 lncRNA upstream 253379 2520932 ~ 2539642 (-) True XLOC_020725
TCONS_00042285 lncRNA upstream 261230 2528783 ~ 2538625 (-) True XLOC_020726
TCONS_00040900 mRNA downstream 898067 1320991 ~ 1359856 (-) True XLOC_020693
TCONS_00040898 mRNA downstream 1012697 1205787 ~ 1245226 (-) True XLOC_020688
TCONS_00040897 mRNA downstream 1020920 1205787 ~ 1237003 (-) False XLOC_020688
TCONS_00040896 mRNA downstream 1089632 1164656 ~ 1168291 (-) True XLOC_020686
TCONS_00040894 mRNA downstream 1178150 1073413 ~ 1079773 (-) True XLOC_020685
TCONS_00040902 mRNA upstream 607285 2874838 ~ 2886937 (-) True XLOC_020737
TCONS_00040903 mRNA upstream 627958 2895511 ~ 2922053 (-) False XLOC_020739
TCONS_00040904 mRNA upstream 629720 2897273 ~ 2929156 (-) False XLOC_020739
TCONS_00040905 mRNA upstream 643813 2911366 ~ 2929127 (-) True XLOC_020739
TCONS_00040906 mRNA upstream 663787 2931340 ~ 2937503 (-) False XLOC_020740
TCONS_00040899 other downstream 1027901 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 1098174 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 1440516 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 1910509 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040924 other upstream 1327715 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 2044250 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 2551857 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 2560403 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 2631033 4898586 ~ 4899116 (-) True XLOC_020764

Expression Profile

//