RNA id: TCONS_00042282


Basic Information

Item Value
RNA id TCONS_00042282
length 1036
lncRNA type read_through
GC content 0.45
exon number 2
gene id XLOC_020723
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2466339 ~ 2496857 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgcagaagtataaatgcacagctacgcgcgttgcatgcgccgtgagttacgccggtcacttgacgcagaggtataaaccaggctttattctCCCCGTCCTTATTTACAGTGAACTGTAAGATGTCTCTTCAGCACAGAAGCCttgaaaaatgttttgctgcactgatcacatttgtgtggcttctctccagtgtggatcagcatGTGTTGCTTGAGACTGTACTTACACCTGAAGCTCTTTCCGCACTGAGTACAAATgtacggtctctctccagtgtgaatcgccTGGTGTATTTTCAGGGTTTGTAACTGACTgtatctcttgtcgcagtgtgaacacttgtaaagtttctctccagtgtgggtcctccGGTGTCGTTTCAAGTCTCCGGATGTAATAAAGCTCTTCCCACACTCCAAGCACGCATGCTCTTTAAccccagtgtggatcttctgatgtgcTATTAAATTTGACAGATGTCCAAAACTGTTTCCGCACTCAGAGCATGAATAAGGCTTCTCGTTTGTGTGAACTCTGAGGTGTCTGTTCAGCTCTGATGGCcatgaaaatgttttgctgcattgatCACATTTGTACGTTTTCTCTGCAGTGTGCATCTTCATGTGGTGATTGAGGCCTGATGATTGTgcgaaactcctcccacactgagtacatgtgtacggtttctctccagtgtggatcatctggTGCTGTTTCAAGTCTCCAACTCtaatgaaactcttcccacactcaaaGCACACAAAGTCTCTCACaccggtgtggatcttctgatgtacTTTTAAATATTGTTGATatataaaactcttcccacactcagagCATGCGTAAGGCCTCTCGTTAGTGTGAACTCTAAGATGGGTCTTCAGGTCTGAAGACTTTAAGAACGTTTTGCTGCACTGATCACATTTGTGTGGCTTATCTCCGGTGTGAATCTTCAGGTGCTGCTTGAGATTATATCTACgcctgaaactctttccacactgagtgcaggtcaaACCTTCTACAGCTGTAAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042274 lncRNA downstream 32463 2209935 ~ 2433876 (-) True XLOC_020716
TCONS_00042272 lncRNA downstream 67295 2193464 ~ 2399044 (-) True XLOC_020715
TCONS_00042280 lncRNA downstream 118303 2266206 ~ 2348036 (-) True XLOC_020721
TCONS_00042276 lncRNA downstream 190403 2233989 ~ 2275936 (-) False XLOC_020718
TCONS_00042279 lncRNA downstream 198786 2257923 ~ 2267553 (-) True XLOC_020720
TCONS_00042284 lncRNA upstream 24075 2520932 ~ 2539642 (-) True XLOC_020725
TCONS_00042285 lncRNA upstream 31926 2528783 ~ 2538625 (-) True XLOC_020726
TCONS_00042286 lncRNA upstream 32397 2529254 ~ 2545551 (-) True XLOC_020727
TCONS_00042287 lncRNA upstream 72320 2569177 ~ 2646010 (-) True XLOC_020728
TCONS_00042288 lncRNA upstream 102162 2599019 ~ 2623874 (-) True XLOC_020729
TCONS_00040900 mRNA downstream 1106483 1320991 ~ 1359856 (-) True XLOC_020693
TCONS_00040898 mRNA downstream 1221113 1205787 ~ 1245226 (-) True XLOC_020688
TCONS_00040897 mRNA downstream 1229336 1205787 ~ 1237003 (-) False XLOC_020688
TCONS_00040896 mRNA downstream 1298048 1164656 ~ 1168291 (-) True XLOC_020686
TCONS_00040894 mRNA downstream 1386566 1073413 ~ 1079773 (-) True XLOC_020685
TCONS_00040902 mRNA upstream 377981 2874838 ~ 2886937 (-) True XLOC_020737
TCONS_00040903 mRNA upstream 398654 2895511 ~ 2922053 (-) False XLOC_020739
TCONS_00040904 mRNA upstream 400416 2897273 ~ 2929156 (-) False XLOC_020739
TCONS_00040905 mRNA upstream 414509 2911366 ~ 2929127 (-) True XLOC_020739
TCONS_00040906 mRNA upstream 434483 2931340 ~ 2937503 (-) False XLOC_020740
TCONS_00040899 other downstream 1236317 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 1306590 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 1648932 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 2118925 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040924 other upstream 1098411 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 1814946 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 2322553 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 2331099 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 2401729 4898586 ~ 4899116 (-) True XLOC_020764

Expression Profile

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