RNA id: TU1220536


Basic Information

Item Value
RNA id TU1220536
length 1647
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1071867
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 41370727 ~ 41372373 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcatgtttattttttattttttttcatctTTTAAATAACTTGCAGAAAATGCCCTTTATGACactcaagaagcattatgaccctcctgtgtcactttacttggaatAAGAACATACACTTTACGACACTGTAAAAAGCATTATGACCGTcataagccagataggcctatcacgtacatgcccttatgtcagtcatcagtcaaaaagagggtgtcttgtcctgctgaaatctgctcctgcattcatcccagtcatcagcaaaccagtgcattggggtaggtgcatgtctgacatcaatttGTGCGCAATTATAATAATTTAATATCGTCAATTTCAGAAAATTGAAtataacataaacatactgttgacatgtTGGCTGTGGTGTAATGGAGTGTTTTGCCatgtgtggtaggttttgtgggttttgacacttatgtaggtgtcataaccagccataaaataatgcaatacTGTCACAACAGGTGACAAGTTAATGATTATGACTGTGTCATAACGTGTTATGACGCTGGGTGTTAAGTAAAGCGTTACCATCACTATGTAACAGGAACTGTCATCATAATTGTTTGCTCTATGGAAGAGGATTTGTTCGGTCCTTATTTCTTATAGTGCTGGCTTGGTTGGTTTGAACTTAGATATGAGCGCAATTGTAGTTTGCTGTCCCCAAGGATTGATATTACTACTTGATAGCAAAACAGATACCATTAGAGAGCATTGTAAAGCTATGTCTTTTGATACTTGTTGTATGCCTAATTCATTAAATAAGTCTGAAGAGTAAGAACATCTGGTGCTAAAACACAAGTTTTCAAGGACTGTGTTCTTTGAGTAATTATTTTTGTCATTTTACTTAATCTGGTAAAGCacactttgttgttgttttgaataGATATCGCTGGTGCTCTCCCATACTGCAATCTCTGAGTTCCACACTACATTTTGTAAAACCAAAACAGAGCCGTATAACAAAATGCCAAACCGTTATGCCTCCCCAAGAAAATGACAGTATGAGGAATTTGAAGACACTGCACAGTACTGTACACAGTCAAGTCGAGGCCTAACAAGATATACGGTATATGATTATACAATTATACCTTGTGGGTTACTAGTAAACAAGTAAACACAAATGTGCTAATGTGCTAATACTCAAAAGACTACAGAAGATGCAAGAGAAAGCATACACTTTTGTCACACAGTATAAATAATGTTTAAAAAAGTATACCTTGTCATATTTTTTGTATATGAGAATATGATGCACACCGAGTATATGGCTGAGTGAGTAGGAACTGAGTAGTGTACGGTCTGTTTCAGTGGGACATTGTAACATGAAGCAGACCAATAGATCTCTGTGAGTGACTGAATTCTTCTAAAATCTACAAATTAGTTTAATATTTAATGTTATAAATCAAACCAATATAGAatacaaaaatatgaaatatagtATGTACCAAAGTGGATGGTCGAATCCACATTTGGGGTTAATTGTTTTCACTGTgtattattttgttgttttattttttatacccatttgtttattttttagcaAAACAGAATCATACAAGTAGAGAATATTTCTATTCCACTGACTCATAAATGCCTTTGAGACAAACCATTTCAGTTCTGtgcaaaataa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1220537 lncRNA downstream 3674 41365991 ~ 41367053 (-) True G1071868
TU1220539 lncRNA downstream 78030 41292407 ~ 41292697 (-) True G1071870
TU1220531 lncRNA downstream 84743 41282730 ~ 41285984 (-) True G1071862
TU1220528 lncRNA downstream 104780 41265726 ~ 41265947 (-) True G1071859
TU1220524 lncRNA downstream 116074 41254405 ~ 41254653 (-) True G1071855
TU1220945 lncRNA upstream 1915 41374288 ~ 41375021 (-) True G1072251
TU1220947 lncRNA upstream 3959 41376332 ~ 41376741 (-) False igsf9bb
TU1220946 lncRNA upstream 5640 41378013 ~ 41379305 (-) True igsf9bb
TU1220951 lncRNA upstream 8223 41380596 ~ 41380887 (-) True G1072257
TU1220949 lncRNA upstream 15260 41387633 ~ 41387951 (-) True G1072255
XM_021623782.2 mRNA downstream 6717 41130156 ~ 41364010 (-) False arhgap32b
XM_021623783.2 mRNA downstream 6717 41130156 ~ 41364010 (-) False arhgap32b
XM_021623784.2 mRNA downstream 6717 41130156 ~ 41364010 (-) False arhgap32b
XM_021623785.2 mRNA downstream 6717 41130156 ~ 41364010 (-) True arhgap32b
XM_021623786.2 mRNA downstream 160563 41130156 ~ 41210164 (-) False arhgap32b
XM_036937598.1 mRNA upstream 3917 41376290 ~ 41566655 (-) False igsf9bb
XR_005035295.1 mRNA upstream 366348 41738721 ~ 41740327 (-) True LOC118937883
XM_021623798.2 mRNA upstream 432703 41805076 ~ 41877145 (-) False esama
XM_021623800.2 mRNA upstream 512366 41884739 ~ 41891363 (-) False LOC110537621
XM_021623801.2 mRNA upstream 512366 41884739 ~ 41891363 (-) True LOC110537621
TU1220392 other downstream 330796 41038866 ~ 41039931 (-) True G1071725
TU1218083 other downstream 2032753 39336104 ~ 39337974 (-) True fkbp6
TU1217986 other downstream 2261765 39108300 ~ 39108962 (-) True G1069456
TU1217947 other downstream 2298255 39041520 ~ 39072472 (-) True LOC110537579
TU1216260 other downstream 3664356 37672182 ~ 37706371 (-) True LOC110539142
TU1221758 other upstream 673490 42045863 ~ 42062632 (-) True G1073009
TU1223569 other upstream 1331630 42704003 ~ 42713923 (-) True G1074731
TU1224206 other upstream 2191412 43563785 ~ 43564240 (-) True G1075335
TU1224273 other upstream 2288186 43660559 ~ 43660837 (-) True G1075399
TU1224387 other upstream 2401691 43774064 ~ 43774425 (-) True G1075509

Expression Profile