RNA id: TU1221202


Basic Information

Item Value
RNA id TU1221202
length 4633
lncRNA type antisense_over
GC content 0.42
exon number 4
gene id G1072497
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 41785132 ~ 41791261 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccttttgctgctataacagcctccactctgctgggaaggctttccactagatgttggaacattgctacggttacttgcttccattcagacacaagagcattagtgaggtcgggcactgatgttgggcgattacaCCTGgatcgcagtcggtgttccaatttatcccaaaggtgtttgatggggatgaggtcagggctctgcacaggtcagtcaagttcttccatatcaatctcgacaaaccatttctgtatctGTATTGTATTCTGtattgtgcacaggggcattgtcatgctgaaacaggaaagggccttccccaaactgttgccacaaaattggaaggacagaatcgtctacaatgtcattgaatgctgtagcattaagacttcccttcactggaactaaggggccctgcccgaaccatgaaaaacagccacagaccattattctgtctccaccaaactttacagttgacattatgctttggggcaggtagcgttcttctggtatctgccaaatccagattcgtccgacggactgccagatgttgaagcATGACTCATCaatccagagaacgtgtttccactgcaccagagtccaatggcagtgagatttacaccactccagccaacgcttggcattgcgcatgttaattttaggtttgtgtgcggctgctcggccatggaaacccatttcttgaagctcccggcaaacagttattgtgctgacgttgcttccagaggtagtttggaactcagtaatgagtgttgcaatcgaggacagacgTTAATTACGTGCTACACGCttcagtggtcccgttctgtgagcttgtgtggcctaccacttcgcggctgaaccactgttgctcctagatgtttccacttcacaataacagcacttacagttgaccagggcagttcTAGCAGAGCAAAAatgtgacttgttggaaaggtggcatcctgtgacagtgccacattgaaagtcactcagctcttcagtaaagccattctactgccaatgtttgtctatggagattgcatggctgtgtgctcgatttgtcagcaacaggtgtggctgaactagtcgaatccactaatttgaaggggtgtccatgtACTTTTGAATATATAGAGTATAGTCTTGCAATACTTTTCGCCTTGGCTTTTTTAACCACTGTTATTTTATTGGGCTTTAATGTATTCtactttcatattttttttttactgtctaAATAAGCTAGGAATATACatacagtcccttcagaaagtattcatatcccttgacttattccacattttgttgtgttacagcctgaattcaaaatgtattaaatatatgttctctcacccatctacacacaatacaccataatgaaaatatgtttttagaaatgtattgaaaattattgaaaattaaatatggAAATAtccaatttacataagtattcacacacctgaaTCAATACATATTAGGATtacctttagcagtgattacatctgtgagtctttccggggaagtctctaagagatttgcACACATGGATTGTACCATAGTTGCACATTTATTATTTAAATcattctttaagctctgtcaagttgattgttgatcattgctagacagccattttcaaatcttgccatagattttcaagccaatttatgtcaaaactgtaactaggccactcagtaaCAGTCAATGTTCTCTTGGTAAGCAtatccagtgtagatttggcattgtgtttttggttattgtcctgctgaaaggtgaattttctgtcagtgtctgttggaaagcagactgaaccaggttttcctctaggattttgcctatgcttagctctattctgtttctttttagcCCCCCTCAAAAATgaagatgacaagcatacccttaacatgaagcagccaccaccatgcttgaaaatattaagAATGGTACTCAGGACATAAATGCTTTGTACTCAGGACATAAATGTAATTTCTTTGCaatattttttgcagttttactttagtgcttttgttgcaaacaggatgcatgttttggaatatttgtattctgtacaggcttccttcttttcactctgtcttttaggttagtattgaggagtaactacaatgttattgatccatcctcagttttctcctatcacagccattaaactctataactgttttaaagtcaccattggcctcatggtgaaatccctgagtggtttccttcctctctggcaactgagttaggaaggccgcctgtatctttgcagtgactgggtgtattgttacaccatacaaagtgtaattaataacttcaccatgctcaaagggatattcaatgtctgcttttagttttttctaccaatgggtgcccttctttgcgaggcattggaaaacctccctggtctttgtggttaaatctgtgtttgaaattcactgctcagctgagagaccttacatatatttgtatgtgtggggtacagagatgaggttatcattcaaaaatcatgttaaacagtaTTATTGCACACAAAGCGAGTCCATGAAacgtatgtgacttgttaagcagatttttactcctgaacttctttaggcttgccataacaaagggattgaatacttattgacccaAGACATTTAAGTGtttcattttttatacatttataaGAGTTTGttaaaaacattattccacttgaacattatgggatattgtgtgaaggccaggctgtaacacaacaaaatgtggaaaaagtccaggggtgtcagtactttctgaaggcactgtaactggaAGTACTACCAAGTTGTTTGTATAACAGAAAGTACGTGTCTTTAGTCACCTGATCAGCAGTGATAAGAGGCTCCTCACTCAGGCAATTGGCATTGTCGTTCTTCTcgttcatctcctcctcctctttttcaTGAATCTCCTGATCGGAGAGGTTGCCGTTGAATCCCTCTGAGTTGGGGTCGTCCCAGctggagacagaggaagggacGTAGTTATCCGTCAGCGCATCCCACACACTGAAACAtggacaacacaaacacacattcagtCACTGCAACACAACAGAAGTACACAGTAAaaatgcaacaaacaaaaaagaaACAGATGCAAACACACAACCACCAACATTGTAACAGGTCATCTCATACACTGCAACACAAGACAAACACACAACCACCAACATTGTAACAGGTCATCTCATACACTGCAACACAAGACAAACACACAACCACCAACATTGTAACAGGTCATTTCATACACTGCAACACAAGACAAACACACAACCACCAACATTGTAACAGGTCATCGCATACACTGCAacacaagacaaacacacagccAACGACGCTGGAATGATCAGGACATTCACAACAAAGCACAATACACTATCAGTCCTCAAGGCTGCAACTATCTGGAAATAGGCTTTTTGTTTGGCACAGAAGCCTAATCCCAAATCCAGTGCCGGTTTGTGATTTAAAGAATTGAGGAGGAGGATGGATTACATAAGAGGAccatctttctcttcctctctagaTGACCCTCCTCTACCCAAATCATATTTGATAGAAATTATCAATTGTAAATCTGCAGCCATTTCCTTCTATTAGTGTTCCGTTGACCATTTGCAGACAGTGAATTCAGAGGAGGAGATGTTCACATGACATAATTGTGCTTTGTTCCCAATTCTGTCCCTCAACTTGCCAACATAATAAATAACATCAAAATGCACATCATAATCCTCCGTATTGCACTCCAGGCTGCAATGCACACTGTCCACTAACAATTAAAGAAAAGCCCACAGTTTACACATTTTTTAAAGGTGTCCAATGTGAAGAAGTATAGATAAAAACAGCCCCTTACAGCATTGTACAGGTCCTCCTCGAACTATAAGCACCTCAGTCCAATCAAGGCTGCAGCCTTGTGAAAATGACCAGAGTAGAACTCTCCCTTTGTTTCCGCTTTCTTTGTTTTCCATCCAGCTTGGCATGGCACCCACACCCTACCCTCCTCTCAGTGGCACTGCCCAGCCATGCGCCAAACAGGAAACAAGCAGCCATTCATCGGGACTCATGACCTCACAGGTCATGCCTGTTGTGttgtccacaacacacacacatacacacctctcCATCTGCCAAACAGGAACTAACTGGTACAGCACCGTCCCATATacattgctcaaaaaaataaagggaacacttaaacaacacaatgtaactccaagtcaatcacacttctgtgaaatcaaactgtccacccaggaagcaacactgattgacaaaaaatgtcacatgctgttgtgcaaatggaatagacaacaggtggaaattataggcaattagcaagacacccccaataaaggagtggttctgcaggtgagaaccacagaccacttctcagttcctatgcttcctggctgatgttttggtcacttttgaatgctggcggtgctttcactctagtggtagcatgagacggagtctacaaccaacacaagtggctcaggtagtgcagctcatccaggatggcacatcaatgcgagctgtggcaagaaggtttgctgtgtctgtcagcgtagtgtccagagcatggaggcgctaccaggagacaggccagtacatcaggagacgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1221226 lncRNA downstream 15215 41769695 ~ 41769917 (-) True G1072519
TU1221205 lncRNA downstream 51079 41733850 ~ 41734053 (-) True G1072500
TU1221204 lncRNA downstream 51532 41733325 ~ 41733600 (-) True G1072499
TU1221083 lncRNA downstream 217223 41567494 ~ 41567909 (-) True G1072378
TU1221074 lncRNA downstream 227514 41557314 ~ 41557618 (-) True G1072369
TU1221245 lncRNA upstream 11976 41803237 ~ 41803457 (-) True G1072538
TU1221247 lncRNA upstream 13851 41805112 ~ 41806144 (-) True esama
TU1221775 lncRNA upstream 287638 42078899 ~ 42079144 (-) True G1073025
TU1221835 lncRNA upstream 375639 42166900 ~ 42192399 (-) True G1073081
TU1222023 lncRNA upstream 615888 42407149 ~ 42407395 (-) True G1073256
XR_005035295.1 mRNA downstream 44805 41738721 ~ 41740327 (-) True LOC118937883
XM_036937598.1 mRNA downstream 218477 41376290 ~ 41566655 (-) False igsf9bb
XM_021623783.2 mRNA downstream 421122 41130156 ~ 41364010 (-) False arhgap32b
XM_021623798.2 mRNA upstream 13815 41805076 ~ 41877145 (-) False esama
XM_021623800.2 mRNA upstream 93478 41884739 ~ 41891363 (-) False LOC110537621
XM_021623801.2 mRNA upstream 93478 41884739 ~ 41891363 (-) True LOC110537621
XM_036937606.1 mRNA upstream 433910 42225171 ~ 42251245 (-) False LOC110537624
XM_021623808.2 mRNA upstream 433910 42225171 ~ 42253779 (-) True LOC110537624
TU1220392 other downstream 745201 41038866 ~ 41039931 (-) True G1071725
TU1218083 other downstream 2447158 39336104 ~ 39337974 (-) True fkbp6
TU1217986 other downstream 2676170 39108300 ~ 39108962 (-) True G1069456
TU1217947 other downstream 2712660 39041520 ~ 39072472 (-) True LOC110537579
TU1216260 other downstream 4078761 37672182 ~ 37706371 (-) True LOC110539142
TU1221758 other upstream 254602 42045863 ~ 42062632 (-) True G1073009
TU1223569 other upstream 912742 42704003 ~ 42713923 (-) True G1074731
TU1224206 other upstream 1772524 43563785 ~ 43564240 (-) True G1075335
TU1224273 other upstream 1869298 43660559 ~ 43660837 (-) True G1075399
TU1224387 other upstream 1982803 43774064 ~ 43774425 (-) True G1075509

Expression Profile