RNA id: TCONS_00042290



Basic Information


Item Value
RNA id TCONS_00042290
length 1296
lncRNA type read_through
GC content 0.43
exon number 2
gene id XLOC_020731
representative True

Chromosome Information


Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2702802 ~ 2791490 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CGATTGTAGAAAGCAAACGCTGAATATTGAACATCTCAGGAAATGTAGAAATCAATGCAGGTGCATTCAGTCCTCAAaaacagacatgtgcaggaaaaTATGGACATATGCTAAACTATTAAATCTGATGTTTGTGAAAACACAATGGAGTTTTCTGGGAGGTAAATGACGTTGATGTGTAAACATCTTTACTAACATGACTAAGACCTCTCCACTGCATGAACTCTAAGATGGCTCTTCACCTCTGAAGACCTCAGGAATGTTTTGCCGCAGTGATCAcacttgtgttttttctctccattgtggATCAGCATGTGTGATTTAAGGTTTGATAATTGGGTAAAACTCTTCCAACATTCAGTgcatgtgtacggtttctctccggtgtgaatccgcTCATGTGCTTTCCGGCATTCCAACCTGGCAaagctcttgtcgcagtgtgagcACTTGTGCGGTTTCTCTCCACTGTGAACCACCTGGTGTCTTTTCAAGTGTCCAACACTGATAAAAGTCTTCTTACACTCAAAGCACGCaaactctttcacaccagtgtggatctgctcatgtttttttaaacatttcttaaatgtaaaactctttccacataaCAAACATGAATAAGGCCTGTCGTTTGAATGAATTCTAAGATGAGCCTTCAGGTCTGCACGCCTCAAGAATGCTTTGCCGCATTGATCACACGTGTGtgttctctctccagtgtggatcaccACGTGTTCATTAAGTTTTGATGAATATCTGAAGCTCTTCCCGCACTGAGTACATGAGTACGGTTTCTCTCGAGTGTGAGTCCGCTCATGTACTTTCAGGATTTGTAAAAGAccgaatctcttgtcgcagtgtgaacacttgtacggtttctctccactgTGAGTCCTCTGGTGTCGGTTTAAGTCTCCAActctaataaaagtcttctcgCACTCAACGCAGGCATGCTTTTTCACACCTATGTGGACCATCTGGTGCGAGTTCAAGTCTCCAGCTCTAATACAACTCTTTCCGCACTCAGAGCAGGAATACGGCTTCTCGTTTGTGTGCCGTCTAAGATGGATCTTCAGCTCTGAACGCCTTGAAAATATTTTGCCGCATCGATCACAAGTGTAcggtttctcttcagtgtgagTCATCTGATGCTGTTTTAAGTTTGACTCAAATttaaaactcctcccacactgagtgcatgcgtaCGGTTTCTCTTCGGTGTGAATCATCTGATGTTGTCTTAACTTTGACTGAaatttaaaactctttccacacaaaGAGCATGGATAG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00042287 lncRNA downstream 56792 2569177 ~ 2646010 (-) True XLOC_020728
TCONS_00042288 lncRNA downstream 78928 2599019 ~ 2623874 (-) True XLOC_020729
TCONS_00042289 lncRNA downstream 90993 2602217 ~ 2611809 (-) True XLOC_020730
TCONS_00042286 lncRNA downstream 157251 2529254 ~ 2545551 (-) True XLOC_020727
TCONS_00042284 lncRNA downstream 163160 2520932 ~ 2539642 (-) True XLOC_020725
TCONS_00042293 lncRNA upstream 3538 2795028 ~ 2825701 (-) True XLOC_020734
TCONS_00042294 lncRNA upstream 7975 2799465 ~ 2807027 (-) True XLOC_020735
TCONS_00042295 lncRNA upstream 22973 2814463 ~ 2828086 (-) True XLOC_020736
TCONS_00042296 lncRNA upstream 98173 2889663 ~ 2892546 (-) True XLOC_020738
TCONS_00040911 lncRNA upstream 355610 3147100 ~ 3152146 (-) True XLOC_020742
TCONS_00040900 mRNA downstream 1342946 1320991 ~ 1359856 (-) True XLOC_020693
TCONS_00040898 mRNA downstream 1457576 1205787 ~ 1245226 (-) True XLOC_020688
TCONS_00040897 mRNA downstream 1465799 1205787 ~ 1237003 (-) False XLOC_020688
TCONS_00040896 mRNA downstream 1534511 1164656 ~ 1168291 (-) True XLOC_020686
TCONS_00040894 mRNA downstream 1623029 1073413 ~ 1079773 (-) True XLOC_020685
TCONS_00040902 mRNA upstream 83348 2874838 ~ 2886937 (-) True XLOC_020737
TCONS_00040903 mRNA upstream 104021 2895511 ~ 2922053 (-) False XLOC_020739
TCONS_00040904 mRNA upstream 105783 2897273 ~ 2929156 (-) False XLOC_020739
TCONS_00040905 mRNA upstream 119876 2911366 ~ 2929127 (-) True XLOC_020739
TCONS_00040906 mRNA upstream 139850 2931340 ~ 2937503 (-) False XLOC_020740
TCONS_00040899 other downstream 1472780 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 1543053 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 1885395 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 2355388 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040924 other upstream 803778 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 1520313 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 2027920 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 2036466 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 2107096 4898586 ~ 4899116 (-) True XLOC_020764

Expression Profile


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