RNA id: TU1224419


Basic Information

Item Value
RNA id TU1224419
length 227
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1075528
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 43826743 ~ 43826969 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtacagtactaatgcaattagtcaAATCAATCACActacgaaatgctaccaaataaaccacaattcattcataatactgtgaatatatagtttcacaggcacattttttttctggtttgtgcgaaatggttaagaataatataaaaccactctgcacaccaccaaggtgaattggtttagtcttgactcttggttgacggTGTTGGGGGATGagtaatgtattgatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1224301 lncRNA downstream 32032 43794115 ~ 43794711 (-) True G1075427
TU1224394 lncRNA downstream 41456 43785056 ~ 43785287 (-) True G1075516
TU1224391 lncRNA downstream 45459 43781037 ~ 43781284 (-) True G1075513
TU1224388 lncRNA downstream 51552 43774575 ~ 43775191 (-) True G1075510
TU1224384 lncRNA downstream 56233 43770181 ~ 43770510 (-) True G1075506
TU1224426 lncRNA upstream 11423 43838392 ~ 43838618 (-) True G1075535
TU1224427 lncRNA upstream 12002 43838971 ~ 43839173 (-) True G1075536
TU1224429 lncRNA upstream 37900 43864869 ~ 43865070 (-) True G1075538
TU1224430 lncRNA upstream 39422 43866391 ~ 43867024 (-) True G1075539
TU1224493 lncRNA upstream 156931 43983900 ~ 44018865 (-) True G1075600
XM_021623828.2 mRNA downstream 375 43825477 ~ 43826368 (-) True LOC110537639
XM_021623822.2 mRNA downstream 57230 43757940 ~ 43769513 (-) False LOC110537637
XM_021623823.2 mRNA downstream 57230 43757940 ~ 43769513 (-) False LOC110537637
XM_021623824.2 mRNA downstream 57240 43757940 ~ 43769503 (-) False LOC110537637
XR_005035310.1 mRNA downstream 97891 43728759 ~ 43728852 (-) True LOC118937901
XM_021623829.2 mRNA upstream 13875 43840844 ~ 43863956 (-) True LOC110537640
XM_021623836.2 mRNA upstream 93925 43920894 ~ 43945570 (-) False LOC110537642
XM_021623835.2 mRNA upstream 93925 43920894 ~ 43945854 (-) False LOC110537642
XM_036937621.1 mRNA upstream 93925 43920894 ~ 43945854 (-) False LOC110537642
XM_036937623.1 mRNA upstream 93925 43920894 ~ 43945854 (-) False LOC110537642
TU1224387 other downstream 52318 43774064 ~ 43774425 (-) True G1075509
TU1224273 other downstream 165906 43660559 ~ 43660837 (-) True G1075399
TU1224206 other downstream 262503 43563785 ~ 43564240 (-) True G1075335
TU1223569 other downstream 1112820 42704003 ~ 42713923 (-) True G1074731
TU1221758 other downstream 1764111 42045863 ~ 42062632 (-) True G1073009
TU1225419 other upstream 627679 44454648 ~ 44455270 (-) True G1076460
TU1225480 other upstream 719550 44546519 ~ 44600888 (-) False LOC110537661
TU1225479 other upstream 753789 44580758 ~ 44600888 (-) True LOC110537661
TU1225874 other upstream 1306883 45133852 ~ 45153337 (-) True gria4b
TU1227478 other upstream 2375635 46202604 ~ 46206088 (-) True G1078323

Expression Profile