RNA id: TU1224861



Basic Information


Item Value
RNA id TU1224861
length 450
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1075944
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 44416378 ~ 44416827 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcccctctcattcagccccccttcacagtagaagcctcaaacaagtttctaaagacgcttgacatctagtggaagccttaggaagtgcaacatgaccaatatcccactatcttcaataggggctgagttgaaaatcgaccaacctcagatttcccacttcctggttggatttttctcaggtttttgcctgccatatgagttctgttatactcacagacatcattcaaacagttttagaaacttcagagtgttttctatccacatatactaataatatgcacatattcgcaactgggactgaggagcaggcaatttactctgggcaccttattcatccaagctactcaatactgcccccagccataagaagtaaaACAATTTCAGTTAAGTgactgcacctgctgtcctttcaaattaAAATGCAAacgtttcagttgggcagttaggttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1224856 lncRNA downstream 6374 44409773 ~ 44410004 (-) True G1075939
TU1224730 lncRNA downstream 89472 44326590 ~ 44326906 (-) True G1075825
TU1224709 lncRNA downstream 104455 44311395 ~ 44311923 (-) True G1075804
TU1224695 lncRNA downstream 112228 44303877 ~ 44304150 (-) True G1075790
TU1224613 lncRNA downstream 225500 44190677 ~ 44190878 (-) True G1075711
TU1224862 lncRNA upstream 599 44417426 ~ 44417628 (-) True G1075945
TU1224867 lncRNA upstream 9270 44426097 ~ 44426312 (-) True G1075950
TU1224853 lncRNA upstream 12239 44429066 ~ 44429678 (-) True G1075936
TU1225417 lncRNA upstream 35657 44452484 ~ 44452684 (-) True G1076458
TU1225436 lncRNA upstream 54842 44471669 ~ 44472035 (-) True G1076474
XM_036937627.1 mRNA downstream 18410 44391032 ~ 44397968 (-) True LOC110538901
XM_021623864.2 mRNA downstream 27524 44377943 ~ 44388854 (-) True LOC110537655
XM_021623862.2 mRNA downstream 43181 44332876 ~ 44373197 (-) True LOC110537654
XM_021623858.2 mRNA downstream 121367 44245607 ~ 44295011 (-) False LOC110537653
XM_021623865.2 mRNA upstream 13243 44430070 ~ 44439278 (-) True LOC110537656
XM_036937629.1 mRNA upstream 40149 44456976 ~ 44470956 (-) False alkbh6
XM_021623866.2 mRNA upstream 40149 44456976 ~ 44470957 (-) False alkbh6
XM_021623867.2 mRNA upstream 40149 44456976 ~ 44473459 (-) True alkbh6
XM_021623868.2 mRNA upstream 63016 44479843 ~ 44515057 (-) False nova1
TU1224387 other downstream 641953 43774064 ~ 43774425 (-) True G1075509
TU1224273 other downstream 755541 43660559 ~ 43660837 (-) True G1075399
TU1224206 other downstream 852138 43563785 ~ 43564240 (-) True G1075335
TU1223569 other downstream 1702455 42704003 ~ 42713923 (-) True G1074731
TU1221758 other downstream 2353746 42045863 ~ 42062632 (-) True G1073009
TU1225419 other upstream 37821 44454648 ~ 44455270 (-) True G1076460
TU1225480 other upstream 129692 44546519 ~ 44600888 (-) False LOC110537661
TU1225479 other upstream 163931 44580758 ~ 44600888 (-) True LOC110537661
TU1225874 other upstream 717025 45133852 ~ 45153337 (-) True gria4b
TU1227478 other upstream 1785777 46202604 ~ 46206088 (-) True G1078323

Expression Profile