RNA id: TU1225503


Basic Information

Item Value
RNA id TU1225503
length 1095
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1076534
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 44583390 ~ 44584542 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcaGTTTAGTTGGGCCAACTAACgcactttcaacatttagataataaagAATTTAtatttgaaaaatgaaaaaacattggtaaattgaaaaaaatgtggtaaagtctttattatctaaatgttgaaagtgcGTAGGCAATGGAGATAAACAcaatggtgcagtttgaggccatgtggccgAGAATGATATGTGCGCTGGAGATGGGGGtatgagcaggtgggtctgggcatgGGTGATGTTATCGTCGTtttatgtgtatgttttgtgttgttgtgtatgttttttaaaatcaattctgacaaaaaaaatacaaaaggagGTAAATGACAATAAAAAAAAGGTAATATTATTTTACTCACATGGGTATCCAGCGGTGGTGTGTAGCAGGTCCATCCCAGACATGTTCATGGCGTAATGGGGTTGCTTAATGTAGGACATCATCCTCGCACCGGGTTTTTATGCCTTCTCCCTCACTTGGTCGTCTCTCTGAACAGGCACACACGACGGACTTATTTGGCTATTTCCCACTAGTCCCTCTCCGTTGGTAATGTATTGAAGTTTAGGTCCCGCTCCAAATCGACCTCGCCAAGTGACAAAGGTATCTTGAGATGTCTCAAAGTTATTTGCCTTTCTTTATTTTCCCTCTTACTGTTTCTCACTTGACTTGTCgaaaacacaaaaaaatgtaaagtgCAACCCTCGTGACAATTGCGCACCGCAGTTTAGGACATAGTAGAGTGCGCGGACTCTTATATTTTGGCGCGCCAGGAGCAGGTAAAGGTGGGTGCTGCCGGTGAGCGGGGTGATGCCACGACACTGACTTATTTTACAGACACGGTGAGCTAATTAAAGGTACCAAGTGGACGCACagaacccccctccctctctctctttctcgctctattTTGTCTCTGCCCATCCCACTACACTTCATCGCATCATCTATTAAACTTTTATTCACAgatacatttacaaacaatttTGCAGATAGGTCTACTTTTTCGTAGTAGAAAACGAAATATGTCACATTAAGATTTTCGCATTCGTCACATTTCCATGGAACAAAATAATATACGCCCTGGGCTGATTTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1225485 lncRNA downstream 29107 44552944 ~ 44554283 (-) True G1076519
TU1225426 lncRNA downstream 105231 44477370 ~ 44478159 (-) True G1076464
TU1225427 lncRNA downstream 106145 44476294 ~ 44477245 (-) True G1076465
TU1225437 lncRNA downstream 110200 44472842 ~ 44473190 (-) True G1076475
TU1225436 lncRNA downstream 111355 44471669 ~ 44472035 (-) True G1076474
TU1225518 lncRNA upstream 17774 44602316 ~ 44603294 (-) True G1076549
TU1225564 lncRNA upstream 108320 44692862 ~ 44697846 (-) False G1076588
TU1225565 lncRNA upstream 108320 44692862 ~ 44697846 (-) False G1076588
TU1225566 lncRNA upstream 108320 44692862 ~ 44697846 (-) False G1076588
TU1225567 lncRNA upstream 108320 44692862 ~ 44697846 (-) False G1076588
LOC118937885 mRNA downstream 14250 44564224 ~ 44569140 (-) True LOC118937885
XM_036937630.1 mRNA downstream 64168 44479843 ~ 44519222 (-) True nova1
XM_021623868.2 mRNA downstream 68333 44479843 ~ 44515057 (-) False nova1
XM_021623867.2 mRNA downstream 109931 44456976 ~ 44473459 (-) True alkbh6
XM_021623866.2 mRNA downstream 112433 44456976 ~ 44470957 (-) False alkbh6
XM_021623872.2 mRNA upstream 10992 44595534 ~ 44601149 (-) False LOC110537661
XM_021626111.2 mRNA upstream 22620 44607162 ~ 44610310 (-) False plekhb1
XM_021626112.2 mRNA upstream 22620 44607162 ~ 44610310 (-) True plekhb1
XM_036937636.1 mRNA upstream 299251 44883793 ~ 44965601 (-) False LOC110537668
XM_021623883.2 mRNA upstream 387456 44971998 ~ 45021139 (-) False LOC110537669
TU1225419 other downstream 128120 44454648 ~ 44455270 (-) True G1076460
TU1224387 other downstream 808965 43774064 ~ 43774425 (-) True G1075509
TU1224273 other downstream 922553 43660559 ~ 43660837 (-) True G1075399
TU1224206 other downstream 1019150 43563785 ~ 43564240 (-) True G1075335
TU1223569 other downstream 1869467 42704003 ~ 42713923 (-) True G1074731
TU1225874 other upstream 549310 45133852 ~ 45153337 (-) True gria4b
TU1227478 other upstream 1618062 46202604 ~ 46206088 (-) True G1078323
TU1227962 other upstream 2231901 46816443 ~ 46817065 (-) True G1078783
TU1229609 other upstream 3330009 47914551 ~ 47922446 (-) True LOC110537706
TU1230355 other upstream 3833879 48418421 ~ 48418884 (-) True G1081055

Expression Profile