RNA id: TU1225566


Basic Information

Item Value
RNA id TU1225566
length 4923
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G1076588
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 44692862 ~ 44697846 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTGGGAAATATTTTAATAGTTATTGAATGTTCTACATCGTACAGTAAGTATTATACAATTACAAACTTGCCTTGTCACCAGGACCACTATCCGATCCTCATTAGAACAAAATCAGATTTACACTTCATATACACAAGTCTGATGTGGGTCTTTGCTTCAAGAACGTCCCAACCGCATGTTATAAAACGttctgccagcattgctgcaacGTAGTGACAGAACATAGCAAAGACTCTGGGGGCCATTAGTCGGGAAGTAGTTTTAATCTCAAGGTGCTGACTCTTATAAAGTCGGTCTTAAAAATAGACTTTTTTGTGAAGACGAGTATACTTCCCTCTCTCGAAATTAGTGTTCAAATCAAAAGTTTGACAAGGCCGAAGTTCATCGTGACCAAAGGAAACAGAAAAGGCATAGGGATTGTTACTCTTTCATGTTCAACATTGGTGGAGCTGCTTGCTTCTCGACCTCCAGGCAATGAGACACCCAGGGCAGCTCCCAGCTCTTAAAATTGCAGACTGAGTTTGCTACGTTGCAGGGATGTTACACATAACATGAAGTGAACAGCGGTGAAACATACTGTAGCAAAAGGAGTTTTGATCCCCGTTTACAAATCTCATGTCTCAATCCACAATCTCTGGACCCATACCCTTTAGCATTTTTCAATAAACATGAATTGTAGTGTAAGGACTTGACTCCAGGCTAGATTTCAGTCTACAGTATGCCCAGTTAGCACATTCAGTTCCCTAGATTTTTCAGGGAACATCTGTTTATGGTGTCAGTTAGGTTTTGGGAACATTTCTCGTGTTTCAATGCCCTGGGCGTTTGAGGAGAAAGGCCAGCGAGTGGGGACTGTATGCCAGTCGTTTCTGACCAGGTTGCCAGATTGTGCCCCTCCCCACATCTGCTCCACTCATCCTACAGACTTGTGTTCTGAAATGCCCCCTGAAGCCCTAAGAGACAACCCACATCAGCTCAACCATAATGATCTTCTATTTTAAGAATAataaacatcaatcaatcaacaaaACCTTAAATAACACTTATGGTAAAAAGCTCTTAAATTACATACCAGAAATGAAAAGTGTATCATTCTTttaatcctttttttttttttttttttttttttttaacacagagGTTATACTCGTAGTACACATGGTTATTTTGGAGGTTTTGAACCTCCAGATATTTAGCACTCAGCATAGCATTCACATAAATTTGGGCCTGTGCAACTAGTCATATGCCTTGTTCAGTTCTTGCATCACATTACATGTTCTAGTGAATAGCACTACAAAACAATATTTGTCAATGGTCTCAAAAAAAAAGCTGTCTGGTTGTTTGTGTTTCTTTGctctaatgccccccccccccccccccccaaaaaaaaatgtagCACAATAAATGTACATTTGAGACTTGTTTTCAATGTTCTTGTCCTATTTGGCTTTGTGATATGCTACTGACAGGGGAAAGTGGAGGTTGGGCAACGTTAGCTCTACAGCCTGACCAGTGCAATTTTGGGAGGAAATTCACACAGGACTGCATACATGCttcacacgcacagacacactacactacacgggAGGTGAGGGGCTGATACTGATAACTTTCctcacacagtcaacacacacatcTATACCCCATTCACTAGTGAATGATACTCTATAAATTGTAATATTTTGGGCGCAGGATACCTTTATGTTATTTTTTTACTGGCGAGGTAACGTGGCATCAAATAAAATAGCATTTTGAATTGTACGTAGTGGTTAACTAATTGTAACAGATTGAAAGAAGCAGTAGCAATTATTCACAACAGATATCTTAAATGTACAGTTGTTTATTGAGACCAAAGAGTACACTATCAAAATGCACTGAACTAAATTAACTCTTAAGAAATCGTAAGATGTCTCTTAAAAGATGAGCTAAGTACCTGTTATTTAGCATAGATTATTACTTTTAGATGTTTGTGCAATACATTTTTTACACACTCACATGATAACTGATATGTGGTCATGACACAGTAAGCTAGTGTTGAACCATAATAACAGAGTATGGAACTCCTCCTCACAACCCAAGCTGAACTCAACCCAAGCTGAACCCTGTTTCCTTGCCAACTCCATTTATAAATTCCAAATGGATTGCTAGCCACTCCTGTGGATCTAGGcggactgggtcaatataccgtACGCGTTACAGTAAAAGCTTCATCTTGCCTTCTGATTGGCTAGGTAGAAATGTCAGCCATATTGCATTCGCCTATCCCAATCTTCTCAGGTCTGCAGTTgtagggactagggagggagttGAGGCTAGCAGTGTTGGGGTTACTTCCACTAATTCAATTCCCTCTCCCTGTAAATTCCAATAAATACAATTCAAATGCCAGGTCAGTCATTGAATCCAGAGATAATTAAATTCCTCTCAATTCCAATGTTAGGTCAATTCCAATATTTCAATTCATAATTCAATATTATCCCCAAAAATTACAAGTTGAAATGATTCAACACAAATCCTGCAGTCCATTTTTTAAATACTAAGTGCATTAGTTCCATCAACTAACAAATATTCAATTACAATTCCATAAAattccaaatatttttttttattcaaattgAATTCAACAAATTCTCTATTTCATAGTGAATTCAAGAATTTAATTGGAATTTTAAATAAAATTGGAATTGAGCCTAAACCTGGGGGCTAGGGTTCGATTTGGAAGTCAACACATGTCCCACACGGACCTCTCCCAACCCAGTGCCCCAGTCATAGGGTTTTTGCCCCACAGACTAAAGGGACATGAAATCATTCAATTTTTTCCTTCCAATTTCCtgtttcaaaaaaaaaaatccctcatACGCATGATTCCCTTCACGATCCTAACTTCCTTCCATGGTGTTTGCCCTGGAAACAATGATGTCCTGGGCCTGTTCTATTAGCTACTctgaagggagggagggcagaggagggagGGCCTAGCAAGGTAGCAGGTTGACCAACATGCAAACAAAATGTTTCCTTTCACTAATTGTATGAGACCTAGGTCCAAAATAAAGTGTTTTTCCACCTGCCATTGTTTAAAAGCATTCACCAGACTGGTGAACTAGTTTCAATTGCATGGACTACTCAGAAACATACACATAGAGACCAGATGACAATTCTCTGGAACACAATTCTCTTGGGACACATCTGTGTTGAGGTCAGTCAGGTTTCtaaaacctattccctatatagtgcactacttttgaccagagccctatattggTAAGGAATAGGGGGCCCTGCACCCCTCACTTCTGCCCTCTCCTGGTCACCTGAGGAACTGATGACACTCTGATCAGGGGCTAAATCTCTATTAAACATGTAAACATGACATGGAATCTTTATTGCAAATAACACTTATCTCTAGCCTGTAAGATTTATGGGAGGCATGCAGCACAGGGCTATGGGTATTGATACTTGACCACTAAACAATTGAGATTATTTTCTTCCTTTTCCCCCTTGTactcctttctccctctttcaaGTCTGCTGTTCTTATGTGTGTCGGCCAGCTATTGACTTTAAAATCCCTTTTGACTCCTTTGACTTAGCTATCCCTGGTCCTGACAATTTGCCTCACCCCTCAAACTCCATGCACCTTCGTTGATACGACACCAGAACTGGATTCAGTTCACAACATAGCCTGCAAGGTACGAGGGAGACCCTATCCAGTCATCGATCCATCGCATCCTATACCATCTACACTTTTAAAATGTGTGCGATGTCCTATACATCTGTAATGTATATCTGTGAACAAGTGTGTCAGTGCGCACCTTACGCATGCCAACTGAAATACCTAAATGCGAGTGCGTTTGCATGTTCGGCAAGCTTTTATGTGTACAAAAGAACTACAAACGCGCACAGGCGCTCGCTGTCACATCAgtatacctatatataatatagtCATGTATAGATATTTCAATTTCTTACTCTACTCTAGTAGACTTACAAGCTAACTATGTCCACTGAACTTACTGAAAATATCCTCTACATGGTGTGTAACTATTATGGTACTTACGGTATTAGTCTTTCTCCTTGTGCAGGGTTTCCCAAAGTCGGTTCCGGGGTCCCCTCTGGGTGCACATTTAATTTTTTGCCCtagtactacacagctgattcaaataatcaaagcttgacgatgagttggttatttgaatcagctgcgtagtgctagggcaaaaaaacaaaaatgtgcacccaaCTTGACTGATATAGTGGGTAAAATATTAAAGAAGCCAAGTTAATGCACTGTTGCTACAAGCTGGAAGACGACCCTTATTATCTTGTGCTGGAAGATGATTGTGTGTGAACGTAAACACAAATGAGAAGGCAAATCAAAAAGGGTGAAAGGAAATTGAGGCGTAACACTTGTACggtgctcccccccccccccccccccccccccccccaagaatgACTGGAAAATAAACGACCGGTACTCGCCTGAAAAAGTATGATTTTTTCCTACAACATTAGAATTTGGCAGCATACAAAGACGTGTACATTCTCACGGCGAAGGGACTGGCTTTGCGTCAGAACCAGTGTTCAgaacacaaaaatacacacacacacacacacacacacacacacacacaaacataaaaaaTAAGCACAAATGTATTATAAATGTACCATACTgttggtcagtgtgtgtctggATTATAAGAGAGAGTCAAAATCAAAGAAACTAATCCCCAAAAAACTGAGGCTGgtcaaaaataataaaaacatgaaAAAGCAGCTTTTCCAAATCACAAAAGAATGCATTAAGTGATCCTTGCACTTTAGTTTTTTGTTCTTGCAGACAGACTTGGTGCTTGTATGCCAGGCCTCCTGCACCAATGTAAGACTTGAGTTATTGTGAGTGATATTGACTCCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1225518 lncRNA downstream 89568 44602316 ~ 44603294 (-) True G1076549
TU1225503 lncRNA downstream 108320 44583390 ~ 44584542 (-) True G1076534
TU1225485 lncRNA downstream 138579 44552944 ~ 44554283 (-) True G1076519
TU1225426 lncRNA downstream 214703 44477370 ~ 44478159 (-) True G1076464
TU1225427 lncRNA downstream 215617 44476294 ~ 44477245 (-) True G1076465
TU1225591 lncRNA upstream 6383 44704229 ~ 44733447 (-) True G1076610
TU1225638 lncRNA upstream 62996 44760842 ~ 44767448 (-) True G1076648
TU1225670 lncRNA upstream 117626 44815472 ~ 44820392 (-) True G1076674
TU1225711 lncRNA upstream 181592 44879438 ~ 44882247 (-) True G1076713
TU1225749 lncRNA upstream 186014 44883860 ~ 44886369 (-) False LOC110537668
XM_021626111.2 mRNA downstream 82552 44607162 ~ 44610310 (-) False plekhb1
XM_021626112.2 mRNA downstream 82552 44607162 ~ 44610310 (-) True plekhb1
XM_021623872.2 mRNA downstream 91713 44595534 ~ 44601149 (-) False LOC110537661
LOC118937885 mRNA downstream 123722 44564224 ~ 44569140 (-) True LOC118937885
XM_036937630.1 mRNA downstream 173640 44479843 ~ 44519222 (-) True nova1
XM_036937636.1 mRNA upstream 185947 44883793 ~ 44965601 (-) False LOC110537668
XM_021623883.2 mRNA upstream 274152 44971998 ~ 45021139 (-) False LOC110537669
XR_005035297.1 mRNA upstream 324978 45022824 ~ 45026146 (-) True LOC118937886
XM_021623886.2 mRNA upstream 332243 45030089 ~ 45072799 (-) False LOC110537671
XM_021623887.2 mRNA upstream 332243 45030089 ~ 45072799 (-) False LOC110537671
TU1225480 other downstream 91974 44546519 ~ 44600888 (-) False LOC110537661
TU1225479 other downstream 91974 44580758 ~ 44600888 (-) True LOC110537661
TU1225419 other downstream 237592 44454648 ~ 44455270 (-) True G1076460
TU1224387 other downstream 918437 43774064 ~ 43774425 (-) True G1075509
TU1224273 other downstream 1032025 43660559 ~ 43660837 (-) True G1075399
TU1225874 other upstream 436006 45133852 ~ 45153337 (-) True gria4b
TU1227478 other upstream 1504758 46202604 ~ 46206088 (-) True G1078323
TU1227962 other upstream 2118597 46816443 ~ 46817065 (-) True G1078783
TU1229609 other upstream 3216705 47914551 ~ 47922446 (-) True LOC110537706
TU1230355 other upstream 3720575 48418421 ~ 48418884 (-) True G1081055

Expression Profile